RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 HINFPQ9BQA5 517 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 SERPINA10Q9UK55 444 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 GJA3Q9Y6H8 435 aa8.31□□□□□ -1.08
VPS35-205ENST00000563984 PPP1R12BO60237 982 aaPredicted RBP8.3□□□□□ -1.08
VPS35-205ENST00000563984 APBA3O96018 575 aa8.3□□□□□ -1.08
VPS35-205ENST00000563984 MAPTP10636 758 aaKnown RBP8.3□□□□□ -1.08
VPS35-205ENST00000563984 C1orf53Q5VUE5 145 aa8.3□□□□□ -1.08
VPS35-205ENST00000563984 C14orf37Q86TY3 774 aa8.3□□□□□ -1.08
VPS35-205ENST00000563984 AVENQ9NQS1 362 aaPredicted RBP8.3□□□□□ -1.08
VPS35-205ENST00000563984 C21orf2O43822 256 aa8.29□□□□□ -1.08
VPS35-205ENST00000563984 CDCA8Q53HL2 280 aa8.29□□□□□ -1.08
VPS35-205ENST00000563984 PRRT3Q5FWE3 981 aa8.29□□□□□ -1.08
VPS35-205ENST00000563984 FAM200AQ8TCP9 573 aa8.29□□□□□ -1.08
VPS35-205ENST00000563984 TNP2Q05952 138 aa8.28□□□□□ -1.08
VPS35-205ENST00000563984 ELOAQ14241 798 aaKnown RBP8.28□□□□□ -1.08
VPS35-205ENST00000563984 FAM182BQ5T319 152 aa8.28□□□□□ -1.08
VPS35-205ENST00000563984 SAMD5Q5TGI4 173 aa8.28□□□□□ -1.08
VPS35-205ENST00000563984 MCTP1Q6DN14 999 aa8.28□□□□□ -1.08
VPS35-205ENST00000563984 C7orf43Q8WVR3 580 aa8.28□□□□□ -1.08
VPS35-205ENST00000563984 SCG3Q8WXD2 468 aaKnown RBP8.28□□□□□ -1.08
VPS35-205ENST00000563984 EIF5BO60841 1220 aaKnown RBP8.27□□□□□ -1.09
VPS35-205ENST00000563984 H2AFB1P0C5Y9 115 aa8.27□□□□□ -1.09
VPS35-205ENST00000563984 H2AFB2P0C5Z0 115 aa8.27□□□□□ -1.09
VPS35-205ENST00000563984 IGFBP4P22692 258 aa8.27□□□□□ -1.09
VPS35-205ENST00000563984 SRPK2P78362 688 aaKnown RBP8.27□□□□□ -1.09
VPS35-205ENST00000563984 C2orf49Q9BVC5 232 aaPredicted RBP8.27□□□□□ -1.09
VPS35-205ENST00000563984 NEUROD4Q9HD90 331 aa8.27□□□□□ -1.09
VPS35-205ENST00000563984 STRN4Q9NRL3 753 aa8.27□□□□□ -1.09
VPS35-205ENST00000563984 ARID3CA6NKF2 412 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 SPDYE3A6NKU9 549 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 FAM229AH3BQW9 127 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 FAM157BP0CG42 384 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 PCBP4P57723 403 aaKnown RBP8.26□□□□□ -1.09
VPS35-205ENST00000563984 LRRC69Q6ZNQ3 347 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 CHMP7Q8WUX9 453 aaPredicted RBP8.26□□□□□ -1.09
VPS35-205ENST00000563984 PHACTR1Q9C0D0 580 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 NOVA2Q9UNW9 492 aaKnown RBP8.26□□□□□ -1.09
VPS35-205ENST00000563984 HCN4Q9Y3Q4 1203 aa8.26□□□□□ -1.09
VPS35-205ENST00000563984 COBLO75128 1261 aa8.25□□□□□ -1.09
VPS35-205ENST00000563984 COL9A3Q14050 684 aaPredicted RBP8.25□□□□□ -1.09
VPS35-205ENST00000563984 RHPN1Q8TCX5 695 aa8.25□□□□□ -1.09
VPS35-205ENST00000563984 ANKIB1Q9P2G1 1089 aa8.25□□□□□ -1.09
VPS35-205ENST00000563984 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.24□□□□□ -1.09
VPS35-205ENST00000563984 LGR5O75473 907 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 ATG7O95352 703 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 LAMC2Q13753 1193 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 HIF1AQ16665 826 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 SWI5Q1ZZU3 235 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 ALDH16A1Q8IZ83 802 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 PBXIP1Q96AQ6 731 aa8.24□□□□□ -1.09
VPS35-205ENST00000563984 FOXO3O43524 673 aa8.23□□□□□ -1.09
VPS35-205ENST00000563984 WEE1P30291 646 aa8.23□□□□□ -1.09
VPS35-205ENST00000563984 PRR12Q9ULL5 1215 aa8.23□□□□□ -1.09
VPS35-205ENST00000563984 ACIN1Q9UKV3 1341 aaKnown RBP8.23□□□□□ -1.09
VPS35-205ENST00000563984 EFSO43281 561 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 GRIK4Q16099 956 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 ZNF468Q5VIY5 522 aaPredicted RBP8.22□□□□□ -1.09
VPS35-205ENST00000563984 HSH2DQ96JZ2 352 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 NACC1Q96RE7 527 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 MDFIQ99750 246 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 MARK1Q9P0L2 795 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 ZMIZ1Q9ULJ6 1067 aa8.22□□□□□ -1.09
VPS35-205ENST00000563984 ELOA3CA0A087WX78 387 aaPredicted RBP8.21□□□□□ -1.1
VPS35-205ENST00000563984 ELOA3DA6NLF2 546 aaPredicted RBP8.21□□□□□ -1.1
VPS35-205ENST00000563984 ELOA3BQ3SY89 546 aa8.21□□□□□ -1.1
VPS35-205ENST00000563984 HOMEZQ8IX15 550 aa8.21□□□□□ -1.1
VPS35-205ENST00000563984 ELOA3Q8NG57 546 aa8.21□□□□□ -1.1
VPS35-205ENST00000563984 COL17A1Q9UMD9 1497 aaPredicted RBP8.2□□□□□ -1.1
VPS35-205ENST00000563984 SFSWAPQ12872 951 aaKnown RBP8.2□□□□□ -1.1
VPS35-205ENST00000563984 RTN1Q16799 776 aa8.2□□□□□ -1.1
VPS35-205ENST00000563984 CCDC82Q8N4S0 544 aa8.2□□□□□ -1.1
VPS35-205ENST00000563984 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS35-205ENST00000563984 YBX3P16989 372 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS35-205ENST00000563984 TXKP42681 527 aa8.19□□□□□ -1.1
VPS35-205ENST00000563984 TRIM28Q13263 835 aaKnown RBP8.19□□□□□ -1.1
VPS35-205ENST00000563984 RAB44Q7Z6P3 723 aaPredicted RBP8.19□□□□□ -1.1
VPS35-205ENST00000563984 NGLY1Q96IV0 654 aa8.19□□□□□ -1.1
VPS35-205ENST00000563984 SUSD3Q96L08 255 aa8.19□□□□□ -1.1
VPS35-205ENST00000563984 FMNL2Q96PY5 1086 aa8.19□□□□□ -1.1
VPS35-205ENST00000563984 PAX4O43316 350 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 FAM69CQ0P6D2 419 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 ADGRE1Q14246 886 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 ZNF280CQ8ND82 737 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 STK32AQ8WU08 396 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 VTI1AQ96AJ9 217 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 KRTAP4-9Q9BYQ8 210 aa8.18□□□□□ -1.1
VPS35-205ENST00000563984 PPP1R15AO75807 674 aaPredicted RBP8.17□□□□□ -1.1
VPS35-205ENST00000563984 ALAS2P22557 587 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 SYT9Q86SS6 491 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 CEP63Q96MT8 703 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 SLC30A3Q99726 388 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 C1orf115Q9H7X2 142 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 PRDM6Q9NQX0 595 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 TIMELESSQ9UNS1 1208 aa8.17□□□□□ -1.1
VPS35-205ENST00000563984 M0R082 166 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 KCNQ4P56696 695 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 MBTPS1Q14703 1052 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 TMEM164Q5U3C3 297 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 IER5Q5VY09 327 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 ZNF417Q8TAU3 575 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms