RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 UTP14AQ9BVJ6 771 aaKnown RBP22.99■■□□□ 1.27
NME3-205ENST00000563854 ZNF277Q9NRM2 450 aaPredicted RBP22.99■■□□□ 1.27
NME3-205ENST00000563854 ANKRD36CQ5JPF3 1778 aa22.99■■□□□ 1.27
NME3-205ENST00000563854 RIC1Q4ADV7 1423 aa22.99■■□□□ 1.27
NME3-205ENST00000563854 VEGFAP15692 232 aaPredicted RBP22.98■■□□□ 1.27
NME3-205ENST00000563854 HSP90AB3PQ58FF7 597 aa22.98■■□□□ 1.27
NME3-205ENST00000563854 DUSP27Q5VZP5 1158 aa22.98■■□□□ 1.27
NME3-205ENST00000563854 ZNF428Q96B54 188 aa22.98■■□□□ 1.27
NME3-205ENST00000563854 TCERG1O14776 1098 aaKnown RBP22.97■■□□□ 1.27
NME3-205ENST00000563854 APLP1P51693 650 aa22.97■■□□□ 1.27
NME3-205ENST00000563854 CALD1Q05682 793 aaKnown RBP22.97■■□□□ 1.27
NME3-205ENST00000563854 C3orf67Q6ZVT6 689 aa22.97■■□□□ 1.27
NME3-205ENST00000563854 RTKN2Q8IZC4 609 aa22.97■■□□□ 1.27
NME3-205ENST00000563854 ZNF316A6NFI3 1004 aaPredicted RBP22.96■■□□□ 1.27
NME3-205ENST00000563854 HOXB7P09629 217 aa22.96■■□□□ 1.27
NME3-205ENST00000563854 FSTL1Q12841 308 aa22.96■■□□□ 1.27
NME3-205ENST00000563854 RBM17Q96I25 401 aaKnown RBP22.96■■□□□ 1.27
NME3-205ENST00000563854 DDNO94850 711 aaPredicted RBP22.95■■□□□ 1.26
NME3-205ENST00000563854 GNAI1P63096 354 aa22.95■■□□□ 1.26
NME3-205ENST00000563854 SMC1BQ8NDV3 1235 aa22.95■■□□□ 1.26
NME3-205ENST00000563854 NLRP3Q96P20 1036 aa22.95■■□□□ 1.26
NME3-205ENST00000563854 IFT57Q9NWB7 429 aa22.95■■□□□ 1.26
NME3-205ENST00000563854 DBF4Q9UBU7 674 aaPredicted RBP22.95■■□□□ 1.26
NME3-205ENST00000563854 WDR90Q96KV7 1748 aa22.94■■□□□ 1.26
NME3-205ENST00000563854 ELL2O00472 640 aaPredicted RBP22.94■■□□□ 1.26
NME3-205ENST00000563854 NLRP10Q86W26 655 aa22.94■■□□□ 1.26
NME3-205ENST00000563854 PPEF1O14829 653 aaPredicted RBP22.93■■□□□ 1.26
NME3-205ENST00000563854 ZNF853P0CG23 659 aa22.93■■□□□ 1.26
NME3-205ENST00000563854 TCIRG1Q13488 830 aa22.93■■□□□ 1.26
NME3-205ENST00000563854 SLC51AQ86UW1 340 aa22.93■■□□□ 1.26
NME3-205ENST00000563854 SYNE4Q8N205 404 aa22.93■■□□□ 1.26
NME3-205ENST00000563854 TRMT112Q9UI30 125 aaKnown RBP22.93■■□□□ 1.26
NME3-205ENST00000563854 ANP32CO43423 234 aa22.92■■□□□ 1.26
NME3-205ENST00000563854 HCLS1P14317 486 aaPredicted RBP22.92■■□□□ 1.26
NME3-205ENST00000563854 HOXA10P31260 410 aaPredicted RBP22.92■■□□□ 1.26
NME3-205ENST00000563854 IARSP41252 1262 aaKnown RBP22.92■■□□□ 1.26
NME3-205ENST00000563854 MRS2Q9HD23 443 aa22.92■■□□□ 1.26
NME3-205ENST00000563854 POTECB2RU33 542 aa22.91■■□□□ 1.26
NME3-205ENST00000563854 HTRA3P83110 453 aa22.91■■□□□ 1.26
NME3-205ENST00000563854 PLBD2Q8NHP8 589 aa22.91■■□□□ 1.26
NME3-205ENST00000563854 CRAMP1Q96RY5 1269 aa22.91■■□□□ 1.26
NME3-205ENST00000563854 HYPKQ9NX55 129 aa22.91■■□□□ 1.26
NME3-205ENST00000563854 RNF123Q5XPI4 1314 aa22.9■■□□□ 1.26
NME3-205ENST00000563854 ZNF541Q9H0D2 1346 aa22.9■■□□□ 1.26
NME3-205ENST00000563854 ANKRD13DQ6ZTN6 518 aa22.9■■□□□ 1.26
NME3-205ENST00000563854 SH3TC1Q8TE82 1336 aa22.89■■□□□ 1.26
NME3-205ENST00000563854 ATP5J2-PTCD1G3V325 749 aa22.89■■□□□ 1.25
NME3-205ENST00000563854 CC2D2BQ6DHV5 1058 aa22.89■■□□□ 1.25
NME3-205ENST00000563854 TMX4Q9H1E5 349 aaPredicted RBP22.89■■□□□ 1.25
NME3-205ENST00000563854 LAMB2P55268 1798 aa22.89■■□□□ 1.25
NME3-205ENST00000563854 ABCC4O15439 1325 aa22.88■■□□□ 1.25
NME3-205ENST00000563854 SLC10A5Q5PT55 438 aa22.88■■□□□ 1.25
NME3-205ENST00000563854 PSMD1Q99460 953 aa22.88■■□□□ 1.25
NME3-205ENST00000563854 SNED1Q8TER0 1413 aa22.88■■□□□ 1.25
NME3-205ENST00000563854 GOLGA2Q08379 1002 aa22.87■■□□□ 1.25
NME3-205ENST00000563854 C8orf58Q8NAV2 365 aa22.87■■□□□ 1.25
NME3-205ENST00000563854 RTL5Q5HYW3 569 aaPredicted RBP22.86■■□□□ 1.25
NME3-205ENST00000563854 RIC3Q7Z5B4 369 aa22.86■■□□□ 1.25
NME3-205ENST00000563854 JDP2Q8WYK2 163 aa22.86■■□□□ 1.25
NME3-205ENST00000563854 TSR2Q969E8 191 aaKnown RBP22.86■■□□□ 1.25
NME3-205ENST00000563854 PHAXQ9H814 394 aaKnown RBP22.86■■□□□ 1.25
NME3-205ENST00000563854 IQCA1LA6NCM1 817 aa22.84■■□□□ 1.25
NME3-205ENST00000563854 DDX46Q7L014 1031 aaKnown RBP22.84■■□□□ 1.25
NME3-205ENST00000563854 LARGE2Q8N3Y3 721 aa22.84■■□□□ 1.25
NME3-205ENST00000563854 FAM89AQ96GI7 184 aa22.84■■□□□ 1.25
NME3-205ENST00000563854 ISCA1Q9BUE6 129 aa22.84■■□□□ 1.25
NME3-205ENST00000563854 POTEIP0CG38 1075 aa22.83■■□□□ 1.25
NME3-205ENST00000563854 POTEJP0CG39 1038 aa22.83■■□□□ 1.25
NME3-205ENST00000563854 GRIPAP1Q4V328 841 aa22.83■■□□□ 1.25
NME3-205ENST00000563854 SALL2Q9Y467 1007 aaPredicted RBP22.83■■□□□ 1.25
NME3-205ENST00000563854 ATP6V0A2Q9Y487 856 aa22.83■■□□□ 1.25
NME3-205ENST00000563854 COL4A5P29400 1685 aa22.83■■□□□ 1.24
NME3-205ENST00000563854 DDX60Q8IY21 1712 aaKnown RBP22.82■■□□□ 1.24
NME3-205ENST00000563854 TSPYL6Q8N831 410 aa22.82■■□□□ 1.24
NME3-205ENST00000563854 L3MBTL3Q96JM7 780 aaPredicted RBP22.82■■□□□ 1.24
NME3-205ENST00000563854 GJA3Q9Y6H8 435 aa22.82■■□□□ 1.24
NME3-205ENST00000563854 FZD9O00144 591 aa22.81■■□□□ 1.24
NME3-205ENST00000563854 PPIP5K2O43314 1243 aa22.81■■□□□ 1.24
NME3-205ENST00000563854 EIF6P56537 245 aaKnown RBP22.81■■□□□ 1.24
NME3-205ENST00000563854 EAPPQ56P03 285 aaPredicted RBP22.81■■□□□ 1.24
NME3-205ENST00000563854 CCDC30Q5VVM6 783 aa22.81■■□□□ 1.24
NME3-205ENST00000563854 WWC1Q8IX03 1113 aa22.81■■□□□ 1.24
NME3-205ENST00000563854 DNAJC5GQ8N7S2 189 aa22.81■■□□□ 1.24
NME3-205ENST00000563854 MYD88Q99836 296 aa22.81■■□□□ 1.24
NME3-205ENST00000563854 GRAPQ13588 217 aa22.8■■□□□ 1.24
NME3-205ENST00000563854 AOC3Q16853 763 aa22.8■■□□□ 1.24
NME3-205ENST00000563854 CHADLQ6NUI6 762 aa22.8■■□□□ 1.24
NME3-205ENST00000563854 NIM1KQ8IY84 436 aa22.8■■□□□ 1.24
NME3-205ENST00000563854 GRAPLQ8TC17 118 aaPredicted RBP22.8■■□□□ 1.24
NME3-205ENST00000563854 TAF1DQ9H5J8 278 aaPredicted RBP22.8■■□□□ 1.24
NME3-205ENST00000563854 SCN4AP35499 1836 aa22.8■■□□□ 1.24
NME3-205ENST00000563854 BBOX1O75936 387 aa22.79■■□□□ 1.24
NME3-205ENST00000563854 CCDC27Q2M243 656 aa22.79■■□□□ 1.24
NME3-205ENST00000563854 DPP8Q6V1X1 898 aaPredicted RBP22.79■■□□□ 1.24
NME3-205ENST00000563854 HACL1Q9UJ83 578 aa22.79■■□□□ 1.24
NME3-205ENST00000563854 TAF1P21675 1872 aa22.78■■□□□ 1.24
NME3-205ENST00000563854 IFFO2Q5TF58 517 aa22.78■■□□□ 1.24
NME3-205ENST00000563854 GPC2Q8N158 579 aa22.78■■□□□ 1.24
NME3-205ENST00000563854 IRS4O14654 1257 aaPredicted RBP22.77■■□□□ 1.24
NME3-205ENST00000563854 DDX58O95786 925 aaKnown RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms