RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PNMA2Q9UL42 364 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 ZNF608Q9ULD9 1512 aaPredicted RBP6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 CUL7Q14999 1698 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 EIF4G3O43432 1585 aaKnown RBP6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 SNAPC4Q5SXM2 1469 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 RAPGEF2Q9Y4G8 1499 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 SFI1A8K8P3 1242 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 K7ELQ4 463 aaPredicted RBP6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 LCE2BO14633 110 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 ST8SIA5O15466 376 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 FGRP09769 529 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 PTK2Q05397 1052 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 DSC3Q14574 896 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 NAA30Q147X3 362 aaPredicted RBP6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 JDP2Q8WYK2 163 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 ARHGAP9Q9BRR9 750 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 TLL2Q9Y6L7 1015 aa6.91□□□□□ -1.3
VPS35P1-201ENST00000563400 ENPP3O14638 875 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 SH3BP5O60239 455 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 ADH1CP00326 375 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 NFE2L2Q16236 605 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 EML3Q32P44 896 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 TSHZ1Q6ZSZ6 1077 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 SH3BP5LQ7L8J4 393 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 ZBTB33Q86T24 672 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 TMTC2Q8N394 836 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 HPS1Q92902 700 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 RNPC3Q96LT9 517 aaKnown RBP6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 CDV3Q9UKY7 258 aaKnown RBP6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 GPSM3Q9Y4H4 160 aa6.9□□□□□ -1.31
VPS35P1-201ENST00000563400 SEC13P55735 322 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 EHHADHQ08426 723 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 NR5A1Q13285 461 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 FKBP5Q13451 457 aaPredicted RBP6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 SH3RF1Q7Z6J0 888 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 SIX5Q8N196 739 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 TMC1Q8TDI8 760 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 CDK15Q96Q40 435 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 CARD14Q9BXL6 1004 aa6.89□□□□□ -1.31
VPS35P1-201ENST00000563400 PLCB3Q01970 1234 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 FOXD4Q12950 439 aaPredicted RBP6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 CBLBQ13191 982 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 NNTQ13423 1086 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 BIRC2Q13490 618 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 VASH1Q7L8A9 365 aaPredicted RBP6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 CCAR1Q8IX12 1150 aaKnown RBP6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 RPS6KC1Q96S38 1066 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 SENP2Q9HC62 589 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 MAP4K5Q9Y4K4 846 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 GOLGA3Q08378 1498 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 GRIN2AQ12879 1464 aa6.88□□□□□ -1.31
VPS35P1-201ENST00000563400 ABCA5Q8WWZ7 1642 aa6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 CAPN5O15484 640 aaPredicted RBP6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 PDGFRBP09619 1106 aa6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 ZFYVE27Q5T4F4 411 aa6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 TRMT44Q8IYL2 757 aaKnown RBP6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 ZNF654Q8IZM8 581 aa6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 TPCN2Q8NHX9 752 aa6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 SLC10A4Q96EP9 437 aa6.87□□□□□ -1.31
VPS35P1-201ENST00000563400 KIAA0586Q9BVV6 1533 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 ATP1A2P50993 1020 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 SERINC3Q13530 473 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 LONRF3Q496Y0 759 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 C4orf48Q5BLP8 95 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 CCDC102BQ68D86 513 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 TRIM50Q86XT4 487 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 FAM9BQ8IZU0 186 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 HINFPQ9BQA5 517 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 C1QTNF2Q9BXJ5 285 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 MAF1Q9H063 256 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 SRA1Q9HD15 236 aaKnown RBP6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 TTF2Q9UNY4 1162 aaKnown RBP6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 PRC1O43663 620 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 CTSHP09668 335 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 FGD1P98174 961 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 C4orf46Q504U0 113 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 C11orf96Q7Z7L8 435 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 USP48Q86UV5 1035 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 VPS37DQ86XT2 251 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 HELQQ8TDG4 1101 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 TRIM52Q96A61 297 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 KIFC2Q96AC6 838 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 IER2Q9BTL4 223 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 CCDC87Q9NVE4 849 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 CHIC2Q9UKJ5 165 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 NOD1Q9Y239 953 aa6.86□□□□□ -1.31
VPS35P1-201ENST00000563400 PBRM1Q86U86 1689 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 C11orf95C9JLR9 678 aaPredicted RBP6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 NDUFB5O43674 189 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 IGHA2P01877 340 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 NPR3P17342 541 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 ATF4P18848 351 aaPredicted RBP6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 MPSTP25325 297 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 WDR4P57081 412 aaKnown RBP6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 ERFEQ4G0M1 354 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 KANSL2Q9H9L4 492 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 ATP13A2Q9NQ11 1180 aa6.85□□□□□ -1.31
VPS35P1-201ENST00000563400 GPR182O15218 404 aa6.84□□□□□ -1.31
VPS35P1-201ENST00000563400 FAM13AO94988 1023 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms