RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 COL4A5P29400 1685 aa20.53■□□□□ 0.88
SF3B3-203ENST00000562874 CRY2Q49AN0 593 aa20.52■□□□□ 0.88
SF3B3-203ENST00000562874 HDGFL1Q5TGJ6 251 aa20.52■□□□□ 0.88
SF3B3-203ENST00000562874 MBIPQ9NS73 344 aa20.52■□□□□ 0.88
SF3B3-203ENST00000562874 LRRC37AA6NMS7 1700 aa20.52■□□□□ 0.88
SF3B3-203ENST00000562874 MYH3P11055 1940 aa20.51■□□□□ 0.87
SF3B3-203ENST00000562874 RPGRQ92834 1020 aaKnown RBP20.51■□□□□ 0.87
SF3B3-203ENST00000562874 DDX21Q9NR30 783 aaKnown RBP eCLIP20.51■□□□□ 0.87
SF3B3-203ENST00000562874 ZNF277Q9NRM2 450 aaPredicted RBP20.51■□□□□ 0.87
SF3B3-203ENST00000562874 CFAP44Q96MT7 982 aa20.5■□□□□ 0.87
SF3B3-203ENST00000562874 COL4A1P02462 1669 aa20.5■□□□□ 0.87
SF3B3-203ENST00000562874 ZEB1P37275 1124 aaPredicted RBP20.49■□□□□ 0.87
SF3B3-203ENST00000562874 HTRA3P83110 453 aa20.49■□□□□ 0.87
SF3B3-203ENST00000562874 FKBP4Q02790 459 aaKnown RBP eCLIP20.49■□□□□ 0.87
SF3B3-203ENST00000562874 PARP10Q53GL7 1025 aa20.49■□□□□ 0.87
SF3B3-203ENST00000562874 PPP1R42Q7Z4L9 355 aa20.49■□□□□ 0.87
SF3B3-203ENST00000562874 LTBP1Q14766 1721 aa20.48■□□□□ 0.87
SF3B3-203ENST00000562874 POTECB2RU33 542 aa20.48■□□□□ 0.87
SF3B3-203ENST00000562874 TCERG1O14776 1098 aaKnown RBP20.48■□□□□ 0.87
SF3B3-203ENST00000562874 DDNO94850 711 aaPredicted RBP20.48■□□□□ 0.87
SF3B3-203ENST00000562874 VEGFAP15692 232 aaPredicted RBP20.48■□□□□ 0.87
SF3B3-203ENST00000562874 ALDH1B1P30837 517 aa20.48■□□□□ 0.87
SF3B3-203ENST00000562874 APLP1P51693 650 aa20.48■□□□□ 0.87
SF3B3-203ENST00000562874 DUSP27Q5VZP5 1158 aa20.48■□□□□ 0.87
SF3B3-203ENST00000562874 ZNF541Q9H0D2 1346 aa20.48■□□□□ 0.87
SF3B3-203ENST00000562874 ADAMTSL1Q8N6G6 1762 aa20.47■□□□□ 0.87
SF3B3-203ENST00000562874 CACNA1FO60840 1977 aa20.47■□□□□ 0.87
SF3B3-203ENST00000562874 DPY19L2Q6NUT2 758 aa20.47■□□□□ 0.87
SF3B3-203ENST00000562874 UTP14AQ9BVJ6 771 aaKnown RBP20.47■□□□□ 0.87
SF3B3-203ENST00000562874 HOXB7P09629 217 aa20.46■□□□□ 0.87
SF3B3-203ENST00000562874 FSTL1Q12841 308 aa20.46■□□□□ 0.87
SF3B3-203ENST00000562874 NLRP10Q86W26 655 aa20.46■□□□□ 0.87
SF3B3-203ENST00000562874 SYNE4Q8N205 404 aa20.46■□□□□ 0.87
SF3B3-203ENST00000562874 SMC1BQ8NDV3 1235 aa20.46■□□□□ 0.87
SF3B3-203ENST00000562874 ELL2O00472 640 aaPredicted RBP20.45■□□□□ 0.86
SF3B3-203ENST00000562874 PPEF1O14829 653 aaPredicted RBP20.45■□□□□ 0.86
SF3B3-203ENST00000562874 ZNF853P0CG23 659 aa20.45■□□□□ 0.86
SF3B3-203ENST00000562874 HSP90AB3PQ58FF7 597 aa20.45■□□□□ 0.86
SF3B3-203ENST00000562874 RTKN2Q8IZC4 609 aa20.45■□□□□ 0.86
SF3B3-203ENST00000562874 IFT57Q9NWB7 429 aa20.45■□□□□ 0.86
SF3B3-203ENST00000562874 HCLS1P14317 486 aaPredicted RBP20.44■□□□□ 0.86
SF3B3-203ENST00000562874 HOXA10P31260 410 aaPredicted RBP20.44■□□□□ 0.86
SF3B3-203ENST00000562874 IARSP41252 1262 aaKnown RBP20.44■□□□□ 0.86
SF3B3-203ENST00000562874 TCIRG1Q13488 830 aa20.44■□□□□ 0.86
SF3B3-203ENST00000562874 RBM17Q96I25 401 aaKnown RBP20.44■□□□□ 0.86
SF3B3-203ENST00000562874 DBF4Q9UBU7 674 aaPredicted RBP20.44■□□□□ 0.86
SF3B3-203ENST00000562874 ABCC4O15439 1325 aa20.44■□□□□ 0.86
SF3B3-203ENST00000562874 DUOX1Q9NRD9 1551 aa20.43■□□□□ 0.86
SF3B3-203ENST00000562874 GNAI1P63096 354 aa20.43■□□□□ 0.86
SF3B3-203ENST00000562874 NLRP3Q96P20 1036 aa20.43■□□□□ 0.86
SF3B3-203ENST00000562874 ZNF316A6NFI3 1004 aaPredicted RBP20.42■□□□□ 0.86
SF3B3-203ENST00000562874 POTEIP0CG38 1075 aa20.42■□□□□ 0.86
SF3B3-203ENST00000562874 POTEJP0CG39 1038 aa20.42■□□□□ 0.86
SF3B3-203ENST00000562874 CRAMP1Q96RY5 1269 aa20.42■□□□□ 0.86
SF3B3-203ENST00000562874 TRMT112Q9UI30 125 aaKnown RBP20.42■□□□□ 0.86
SF3B3-203ENST00000562874 ATP5J2-PTCD1G3V325 749 aa20.41■□□□□ 0.86
SF3B3-203ENST00000562874 PLBD2Q8NHP8 589 aa20.41■□□□□ 0.86
SF3B3-203ENST00000562874 MRS2Q9HD23 443 aa20.41■□□□□ 0.86
SF3B3-203ENST00000562874 RNF123Q5XPI4 1314 aa20.41■□□□□ 0.86
SF3B3-203ENST00000562874 SH3TC1Q8TE82 1336 aa20.41■□□□□ 0.86
SF3B3-203ENST00000562874 CALD1Q05682 793 aaKnown RBP20.4■□□□□ 0.86
SF3B3-203ENST00000562874 SLC10A5Q5PT55 438 aa20.4■□□□□ 0.86
SF3B3-203ENST00000562874 C8orf58Q8NAV2 365 aa20.4■□□□□ 0.86
SF3B3-203ENST00000562874 TSR2Q969E8 191 aaKnown RBP20.4■□□□□ 0.86
SF3B3-203ENST00000562874 PSMD1Q99460 953 aa20.4■□□□□ 0.86
SF3B3-203ENST00000562874 PHAXQ9H814 394 aaKnown RBP20.4■□□□□ 0.86
SF3B3-203ENST00000562874 RTL5Q5HYW3 569 aaPredicted RBP20.39■□□□□ 0.85
SF3B3-203ENST00000562874 ANKRD13DQ6ZTN6 518 aa20.39■□□□□ 0.85
SF3B3-203ENST00000562874 HYPKQ9NX55 129 aa20.39■□□□□ 0.85
SF3B3-203ENST00000562874 TRPM7Q96QT4 1865 aa20.39■□□□□ 0.85
SF3B3-203ENST00000562874 ISCA1Q9BUE6 129 aa20.38■□□□□ 0.85
SF3B3-203ENST00000562874 ANP32CO43423 234 aa20.37■□□□□ 0.85
SF3B3-203ENST00000562874 CC2D2BQ6DHV5 1058 aa20.37■□□□□ 0.85
SF3B3-203ENST00000562874 DNAJC5GQ8N7S2 189 aa20.37■□□□□ 0.85
SF3B3-203ENST00000562874 TSPYL6Q8N831 410 aa20.37■□□□□ 0.85
SF3B3-203ENST00000562874 FAM89AQ96GI7 184 aa20.37■□□□□ 0.85
SF3B3-203ENST00000562874 L3MBTL3Q96JM7 780 aaPredicted RBP20.36■□□□□ 0.85
SF3B3-203ENST00000562874 PSME4Q14997 1843 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 FZD9O00144 591 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 GOLGA2Q08379 1002 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 RIC3Q7Z5B4 369 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 LARGE2Q8N3Y3 721 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 JDP2Q8WYK2 163 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 TAF1DQ9H5J8 278 aaPredicted RBP20.35■□□□□ 0.85
SF3B3-203ENST00000562874 ATP6V0A2Q9Y487 856 aa20.35■□□□□ 0.85
SF3B3-203ENST00000562874 SCN9AQ15858 1988 aa20.34■□□□□ 0.85
SF3B3-203ENST00000562874 IQCA1LA6NCM1 817 aa20.34■□□□□ 0.85
SF3B3-203ENST00000562874 PPIP5K2O43314 1243 aa20.34■□□□□ 0.85
SF3B3-203ENST00000562874 AOC3Q16853 763 aa20.34■□□□□ 0.85
SF3B3-203ENST00000562874 EAPPQ56P03 285 aaPredicted RBP20.34■□□□□ 0.85
SF3B3-203ENST00000562874 DDX46Q7L014 1031 aaKnown RBP20.34■□□□□ 0.85
SF3B3-203ENST00000562874 MYD88Q99836 296 aa20.34■□□□□ 0.85
SF3B3-203ENST00000562874 SALL2Q9Y467 1007 aaPredicted RBP20.34■□□□□ 0.85
SF3B3-203ENST00000562874 GJA3Q9Y6H8 435 aa20.34■□□□□ 0.85
SF3B3-203ENST00000562874 GRAPQ13588 217 aa20.33■□□□□ 0.85
SF3B3-203ENST00000562874 CHADLQ6NUI6 762 aa20.33■□□□□ 0.85
SF3B3-203ENST00000562874 WWC1Q8IX03 1113 aa20.33■□□□□ 0.85
SF3B3-203ENST00000562874 GRAPLQ8TC17 118 aaPredicted RBP20.33■□□□□ 0.85
SF3B3-203ENST00000562874 KLRG1Q96E93 195 aa20.33■□□□□ 0.85
SF3B3-203ENST00000562874 A0A1B0GUL6 1792 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms