RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PDIA6Q15084 440 aa21.74■■□□□ 1.07
CLN3-208ENST00000561505 SUSD4Q5VX71 490 aa21.74■■□□□ 1.07
CLN3-208ENST00000561505 PNNQ9H307 717 aaKnown RBP21.74■■□□□ 1.07
CLN3-208ENST00000561505 BABAM1Q9NWV8 329 aa21.74■■□□□ 1.07
CLN3-208ENST00000561505 MKRN1Q9UHC7 482 aaKnown RBP21.74■■□□□ 1.07
CLN3-208ENST00000561505 RRP7AQ9Y3A4 280 aaKnown RBP21.74■■□□□ 1.07
CLN3-208ENST00000561505 COL4A5P29400 1685 aa21.74■■□□□ 1.07
CLN3-208ENST00000561505 TMEM88BA6NKF7 163 aa21.73■■□□□ 1.07
CLN3-208ENST00000561505 SLC10A5Q5PT55 438 aa21.73■■□□□ 1.07
CLN3-208ENST00000561505 KIF6Q6ZMV9 814 aa21.73■■□□□ 1.07
CLN3-208ENST00000561505 THUMPD2Q9BTF0 503 aaKnown RBP21.73■■□□□ 1.07
CLN3-208ENST00000561505 NGEFQ8N5V2 710 aa21.71■■□□□ 1.07
CLN3-208ENST00000561505 JDP2Q8WYK2 163 aa21.71■■□□□ 1.07
CLN3-208ENST00000561505 RNF123Q5XPI4 1314 aa21.71■■□□□ 1.07
CLN3-208ENST00000561505 RASSF10A6NK89 507 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 MYL6BP14649 208 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 PARP10Q53GL7 1025 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 CNTROBQ8N137 903 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 VPS33BQ9H267 617 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 ZBTB3Q9H5J0 574 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 PRDM10Q9NQV6 1147 aa21.7■■□□□ 1.06
CLN3-208ENST00000561505 GPTP24298 496 aa21.69■■□□□ 1.06
CLN3-208ENST00000561505 VEGFBP49765 207 aa21.69■■□□□ 1.06
CLN3-208ENST00000561505 C3orf67Q6ZVT6 689 aa21.69■■□□□ 1.06
CLN3-208ENST00000561505 RPGRQ92834 1020 aaKnown RBP21.69■■□□□ 1.06
CLN3-208ENST00000561505 FOXN1O15353 648 aa21.68■■□□□ 1.06
CLN3-208ENST00000561505 EAPPQ56P03 285 aaPredicted RBP21.68■■□□□ 1.06
CLN3-208ENST00000561505 RBM17Q96I25 401 aaKnown RBP21.68■■□□□ 1.06
CLN3-208ENST00000561505 WBP1LQ9NX94 342 aa21.68■■□□□ 1.06
CLN3-208ENST00000561505 LTBP1Q14766 1721 aa21.68■■□□□ 1.06
CLN3-208ENST00000561505 SCNN1DP51172 638 aa21.67■■□□□ 1.06
CLN3-208ENST00000561505 PPP1R42Q7Z4L9 355 aa21.67■■□□□ 1.06
CLN3-208ENST00000561505 RTFDC1Q9BY42 306 aaPredicted RBP21.67■■□□□ 1.06
CLN3-208ENST00000561505 EIF6P56537 245 aaKnown RBP21.66■■□□□ 1.06
CLN3-208ENST00000561505 MAP1SQ66K74 1059 aaPredicted RBP21.66■■□□□ 1.06
CLN3-208ENST00000561505 MAPK8IP3Q9UPT6 1336 aa21.65■■□□□ 1.06
CLN3-208ENST00000561505 PPEF1O14829 653 aaPredicted RBP21.65■■□□□ 1.06
CLN3-208ENST00000561505 SLC51AQ86UW1 340 aa21.65■■□□□ 1.06
CLN3-208ENST00000561505 NLRP3Q96P20 1036 aa21.65■■□□□ 1.06
CLN3-208ENST00000561505 TSPYL4Q9UJ04 414 aa21.65■■□□□ 1.06
CLN3-208ENST00000561505 CLEC11AQ9Y240 323 aa21.65■■□□□ 1.06
CLN3-208ENST00000561505 ATP6V0A2Q9Y487 856 aa21.65■■□□□ 1.06
CLN3-208ENST00000561505 RIPK4P57078 832 aa21.63■■□□□ 1.05
CLN3-208ENST00000561505 PROSER3Q2NL68 480 aa21.63■■□□□ 1.05
CLN3-208ENST00000561505 DEFB115Q30KQ5 88 aa21.63■■□□□ 1.05
CLN3-208ENST00000561505 USP50Q70EL3 339 aaPredicted RBP21.63■■□□□ 1.05
CLN3-208ENST00000561505 LARGE2Q8N3Y3 721 aa21.63■■□□□ 1.05
CLN3-208ENST00000561505 UTP14AQ9BVJ6 771 aaKnown RBP21.63■■□□□ 1.05
CLN3-208ENST00000561505 DDX21Q9NR30 783 aaKnown RBP eCLIP21.63■■□□□ 1.05
CLN3-208ENST00000561505 TMPOP42166 694 aaKnown RBP21.62■■□□□ 1.05
CLN3-208ENST00000561505 EPS15P42566 896 aa21.62■■□□□ 1.05
CLN3-208ENST00000561505 CTCFP49711 727 aaPredicted RBP21.62■■□□□ 1.05
CLN3-208ENST00000561505 RALBP1Q15311 655 aa21.62■■□□□ 1.05
CLN3-208ENST00000561505 CAPN15O75808 1086 aa21.61■■□□□ 1.05
CLN3-208ENST00000561505 BBOX1O75936 387 aa21.61■■□□□ 1.05
CLN3-208ENST00000561505 ABCC4O15439 1325 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 CHL1O00533 1208 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 HSP90AB3PQ58FF7 597 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 NLRP10Q86W26 655 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 SP8Q8IXZ3 490 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 PGAP2Q9UHJ9 254 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 GJA3Q9Y6H8 435 aa21.6■■□□□ 1.05
CLN3-208ENST00000561505 EIF2S2P20042 333 aaKnown RBP21.59■■□□□ 1.05
CLN3-208ENST00000561505 LMOD1P29536 600 aaPredicted RBP21.59■■□□□ 1.05
CLN3-208ENST00000561505 LMOD3Q0VAK6 560 aa21.59■■□□□ 1.05
CLN3-208ENST00000561505 TCIRG1Q13488 830 aa21.59■■□□□ 1.05
CLN3-208ENST00000561505 COPS6Q7L5N1 327 aa21.59■■□□□ 1.05
CLN3-208ENST00000561505 NIM1KQ8IY84 436 aa21.59■■□□□ 1.05
CLN3-208ENST00000561505 ANKRD36CQ5JPF3 1778 aa21.59■■□□□ 1.05
CLN3-208ENST00000561505 THSD7BQ9C0I4 1608 aa21.58■■□□□ 1.05
CLN3-208ENST00000561505 WDR33Q9C0J8 1336 aaKnown RBP21.58■■□□□ 1.05
CLN3-208ENST00000561505 CXCL9Q07325 125 aa21.58■■□□□ 1.05
CLN3-208ENST00000561505 SUPT20HQ8NEM7 779 aa21.58■■□□□ 1.05
CLN3-208ENST00000561505 GPRC5DQ9NZD1 345 aa21.58■■□□□ 1.05
CLN3-208ENST00000561505 ZNRF3Q9ULT6 936 aa21.58■■□□□ 1.05
CLN3-208ENST00000561505 PPIP5K2O43314 1243 aa21.57■■□□□ 1.04
CLN3-208ENST00000561505 ANXA1P04083 346 aa21.57■■□□□ 1.04
CLN3-208ENST00000561505 CST9Q5W186 159 aa21.57■■□□□ 1.04
CLN3-208ENST00000561505 ADARB2Q9NS39 739 aaKnown RBP21.57■■□□□ 1.04
CLN3-208ENST00000561505 CDHR2Q9BYE9 1310 aa21.56■■□□□ 1.04
CLN3-208ENST00000561505 MAP2K1Q02750 393 aaPredicted RBP21.56■■□□□ 1.04
CLN3-208ENST00000561505 KIAA2012Q0VF49 1180 aa21.56■■□□□ 1.04
CLN3-208ENST00000561505 AOC3Q16853 763 aa21.56■■□□□ 1.04
CLN3-208ENST00000561505 XAGE3Q8WTP9 111 aa21.56■■□□□ 1.04
CLN3-208ENST00000561505 AIDAQ96BJ3 306 aa21.56■■□□□ 1.04
CLN3-208ENST00000561505 LAMB2P55268 1798 aa21.56■■□□□ 1.04
CLN3-208ENST00000561505 FMR1Q06787 632 aaKnown RBP eCLIP21.55■■□□□ 1.04
CLN3-208ENST00000561505 TRIM35Q9UPQ4 493 aa21.55■■□□□ 1.04
CLN3-208ENST00000561505 TCERG1O14776 1098 aaKnown RBP21.54■■□□□ 1.04
CLN3-208ENST00000561505 HOXB7P09629 217 aa21.54■■□□□ 1.04
CLN3-208ENST00000561505 HSPA8P11142 646 aaKnown RBP21.54■■□□□ 1.04
CLN3-208ENST00000561505 TLL2Q9Y6L7 1015 aa21.54■■□□□ 1.04
CLN3-208ENST00000561505 HCLS1P14317 486 aaPredicted RBP21.53■■□□□ 1.04
CLN3-208ENST00000561505 LBX1P52954 281 aa21.53■■□□□ 1.04
CLN3-208ENST00000561505 GRAPQ13588 217 aa21.53■■□□□ 1.04
CLN3-208ENST00000561505 TMC4Q7Z404 712 aa21.53■■□□□ 1.04
CLN3-208ENST00000561505 MPNDQ8N594 471 aa21.53■■□□□ 1.04
CLN3-208ENST00000561505 GRAPLQ8TC17 118 aaPredicted RBP21.53■■□□□ 1.04
CLN3-208ENST00000561505 TMX4Q9H1E5 349 aaPredicted RBP21.53■■□□□ 1.04
CLN3-208ENST00000561505 SH3TC1Q8TE82 1336 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms