RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ZNF34Q8IZ26 560 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 CRAMP1Q96RY5 1269 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 THUMPD2Q9BTF0 503 aaKnown RBP12.07□□□□□ -0.48
HDDC3-204ENST00000559834 ZBTB3Q9H5J0 574 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 ZNF541Q9H0D2 1346 aa12.07□□□□□ -0.48
HDDC3-204ENST00000559834 LMOD1P29536 600 aaPredicted RBP12.06□□□□□ -0.48
HDDC3-204ENST00000559834 CNTROBQ8N137 903 aa12.06□□□□□ -0.48
HDDC3-204ENST00000559834 LARGE2Q8N3Y3 721 aa12.06□□□□□ -0.48
HDDC3-204ENST00000559834 NLRP3Q96P20 1036 aa12.06□□□□□ -0.48
HDDC3-204ENST00000559834 BABAM1Q9NWV8 329 aa12.06□□□□□ -0.48
HDDC3-204ENST00000559834 TSPYL4Q9UJ04 414 aa12.06□□□□□ -0.48
HDDC3-204ENST00000559834 IBTKQ9P2D0 1353 aaPredicted RBP12.05□□□□□ -0.48
HDDC3-204ENST00000559834 ARFGEF2Q9Y6D5 1785 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 SCN4AP35499 1836 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 EIF2S2P20042 333 aaKnown RBP12.05□□□□□ -0.48
HDDC3-204ENST00000559834 RIPK4P57078 832 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 LMOD3Q0VAK6 560 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 AIDAQ96BJ3 306 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 UTP14AQ9BVJ6 771 aaKnown RBP12.05□□□□□ -0.48
HDDC3-204ENST00000559834 VPS33BQ9H267 617 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 GJA3Q9Y6H8 435 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 RNF123Q5XPI4 1314 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 CNTNAP1P78357 1384 aa12.05□□□□□ -0.48
HDDC3-204ENST00000559834 PPEF1O14829 653 aaPredicted RBP12.04□□□□□ -0.48
HDDC3-204ENST00000559834 RALBP1Q15311 655 aa12.04□□□□□ -0.48
HDDC3-204ENST00000559834 DEFB115Q30KQ5 88 aa12.04□□□□□ -0.48
HDDC3-204ENST00000559834 SLC10A5Q5PT55 438 aa12.04□□□□□ -0.48
HDDC3-204ENST00000559834 UBN2Q6ZU65 1347 aa12.04□□□□□ -0.48
HDDC3-204ENST00000559834 CACNA1SQ13698 1873 aa12.04□□□□□ -0.48
HDDC3-204ENST00000559834 ABCC12Q96J65 1359 aa12.04□□□□□ -0.48
HDDC3-204ENST00000559834 RIC1Q4ADV7 1423 aa12.03□□□□□ -0.48
HDDC3-204ENST00000559834 TCERG1O14776 1098 aaKnown RBP12.03□□□□□ -0.48
HDDC3-204ENST00000559834 NTSR2O95665 410 aa12.03□□□□□ -0.48
HDDC3-204ENST00000559834 VEGFBP49765 207 aa12.03□□□□□ -0.48
HDDC3-204ENST00000559834 HSP90AB3PQ58FF7 597 aa12.03□□□□□ -0.48
HDDC3-204ENST00000559834 MAP1SQ66K74 1059 aaPredicted RBP12.03□□□□□ -0.48
HDDC3-204ENST00000559834 NIM1KQ8IY84 436 aa12.03□□□□□ -0.48
HDDC3-204ENST00000559834 SUPT20HQ8NEM7 779 aa12.03□□□□□ -0.48
HDDC3-204ENST00000559834 BBOX1O75936 387 aa12.02□□□□□ -0.49
HDDC3-204ENST00000559834 CTCFP49711 727 aaPredicted RBP12.02□□□□□ -0.49
HDDC3-204ENST00000559834 PRDM10Q9NQV6 1147 aa12.02□□□□□ -0.49
HDDC3-204ENST00000559834 ATP6V0A2Q9Y487 856 aa12.02□□□□□ -0.49
HDDC3-204ENST00000559834 RASSF10A6NK89 507 aa12.01□□□□□ -0.49
HDDC3-204ENST00000559834 FOXN1O15353 648 aa12.01□□□□□ -0.49
HDDC3-204ENST00000559834 PPIP5K2O43314 1243 aa12.01□□□□□ -0.49
HDDC3-204ENST00000559834 TMPOP42166 694 aaKnown RBP12.01□□□□□ -0.49
HDDC3-204ENST00000559834 PDIA6Q15084 440 aa12.01□□□□□ -0.49
HDDC3-204ENST00000559834 USP50Q70EL3 339 aaPredicted RBP12.01□□□□□ -0.49
HDDC3-204ENST00000559834 DDX21Q9NR30 783 aaKnown RBP eCLIP12.01□□□□□ -0.49
HDDC3-204ENST00000559834 ABT1Q9ULW3 272 aaKnown RBP12.01□□□□□ -0.49
HDDC3-204ENST00000559834 NUP98P52948 1817 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 EPS15P42566 896 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 MAP2K1Q02750 393 aaPredicted RBP12□□□□□ -0.49
HDDC3-204ENST00000559834 AIMP1Q12904 312 aaKnown RBP12□□□□□ -0.49
HDDC3-204ENST00000559834 COPS6Q7L5N1 327 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 LRP10Q7Z4F1 713 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 SP8Q8IXZ3 490 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 WBP1LQ9NX94 342 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 SNED1Q8TER0 1413 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 LAMB4A4D0S4 1761 aa12□□□□□ -0.49
HDDC3-204ENST00000559834 SCNN1DP51172 638 aa11.99□□□□□ -0.49
HDDC3-204ENST00000559834 TCIRG1Q13488 830 aa11.99□□□□□ -0.49
HDDC3-204ENST00000559834 C3orf67Q6ZVT6 689 aa11.99□□□□□ -0.49
HDDC3-204ENST00000559834 DDX46Q7L014 1031 aaKnown RBP11.99□□□□□ -0.49
HDDC3-204ENST00000559834 TRMT112Q9UI30 125 aaKnown RBP11.99□□□□□ -0.49
HDDC3-204ENST00000559834 ZNRF3Q9ULT6 936 aa11.99□□□□□ -0.49
HDDC3-204ENST00000559834 WDR33Q9C0J8 1336 aaKnown RBP11.99□□□□□ -0.49
HDDC3-204ENST00000559834 KDM3BQ7LBC6 1761 aa11.99□□□□□ -0.49
HDDC3-204ENST00000559834 DLG5Q8TDM6 1919 aa11.99□□□□□ -0.49
HDDC3-204ENST00000559834 SH3TC1Q8TE82 1336 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 ANXA1P04083 346 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 ECE1P42892 770 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 NEUROD2Q15784 382 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 AOC3Q16853 763 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 PROSER3Q2NL68 480 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 DPP8Q6V1X1 898 aaPredicted RBP11.98□□□□□ -0.49
HDDC3-204ENST00000559834 TMC4Q7Z404 712 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 NLRP10Q86W26 655 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 MPNDQ8N594 471 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 XAGE3Q8WTP9 111 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 NECTIN2Q92692 538 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 BEGAINQ9BUH8 593 aa11.98□□□□□ -0.49
HDDC3-204ENST00000559834 RTFDC1Q9BY42 306 aaPredicted RBP11.98□□□□□ -0.49
HDDC3-204ENST00000559834 ADARB2Q9NS39 739 aaKnown RBP11.98□□□□□ -0.49
HDDC3-204ENST00000559834 ABCC4O15439 1325 aa11.97□□□□□ -0.49
HDDC3-204ENST00000559834 CHL1O00533 1208 aa11.97□□□□□ -0.49
HDDC3-204ENST00000559834 HCLS1P14317 486 aaPredicted RBP11.97□□□□□ -0.49
HDDC3-204ENST00000559834 CXCL9Q07325 125 aa11.97□□□□□ -0.49
HDDC3-204ENST00000559834 TNIP1Q15025 636 aa11.97□□□□□ -0.49
HDDC3-204ENST00000559834 PAXIP1Q6ZW49 1069 aaPredicted RBP11.97□□□□□ -0.49
HDDC3-204ENST00000559834 GPRC5DQ9NZD1 345 aa11.97□□□□□ -0.49
HDDC3-204ENST00000559834 LAS1LQ9Y4W2 734 aaKnown RBP11.97□□□□□ -0.49
HDDC3-204ENST00000559834 LBX1P52954 281 aa11.96□□□□□ -0.49
HDDC3-204ENST00000559834 KIAA2012Q0VF49 1180 aa11.96□□□□□ -0.49
HDDC3-204ENST00000559834 GRAPQ13588 217 aa11.96□□□□□ -0.49
HDDC3-204ENST00000559834 CIAPIN1Q6FI81 312 aa11.96□□□□□ -0.49
HDDC3-204ENST00000559834 ANKRD13DQ6ZTN6 518 aa11.96□□□□□ -0.49
HDDC3-204ENST00000559834 GRAPLQ8TC17 118 aaPredicted RBP11.96□□□□□ -0.49
HDDC3-204ENST00000559834 RUNDC1Q96C34 613 aa11.96□□□□□ -0.49
HDDC3-204ENST00000559834 BCL2L13Q9BXK5 485 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms