RNA–Protein interactions for RNA: ENST00000558855.5

VPS18-203, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS18, Length 1,050 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-203ENST00000558855 ZNF428Q96B54 188 aa17.81■□□□□ 0.44
VPS18-203ENST00000558855 RUNDC1Q96C34 613 aa17.81■□□□□ 0.44
VPS18-203ENST00000558855 SYNE4Q8N205 404 aa17.8■□□□□ 0.44
VPS18-203ENST00000558855 FKBP4Q02790 459 aaKnown RBP eCLIP17.79■□□□□ 0.44
VPS18-203ENST00000558855 CCDC184Q52MB2 194 aa17.79■□□□□ 0.44
VPS18-203ENST00000558855 XAGE3Q8WTP9 111 aa17.79■□□□□ 0.44
VPS18-203ENST00000558855 LAS1LQ9Y4W2 734 aaKnown RBP17.79■□□□□ 0.44
VPS18-203ENST00000558855 GTF2E1P29083 439 aaPredicted RBP17.78■□□□□ 0.44
VPS18-203ENST00000558855 LMOD3Q0VAK6 560 aa17.78■□□□□ 0.44
VPS18-203ENST00000558855 AIMP1Q12904 312 aaKnown RBP17.78■□□□□ 0.44
VPS18-203ENST00000558855 WDR43Q15061 677 aaKnown RBP eCLIP17.78■□□□□ 0.44
VPS18-203ENST00000558855 COPS6Q7L5N1 327 aa17.78■□□□□ 0.44
VPS18-203ENST00000558855 SMC1BQ8NDV3 1235 aa17.78■□□□□ 0.44
VPS18-203ENST00000558855 NYXQ9GZU5 481 aa17.78■□□□□ 0.44
VPS18-203ENST00000558855 BABAM1Q9NWV8 329 aa17.78■□□□□ 0.44
VPS18-203ENST00000558855 SOGA3Q5TF21 947 aa17.77■□□□□ 0.44
VPS18-203ENST00000558855 CHPF2Q9P2E5 772 aa17.77■□□□□ 0.44
VPS18-203ENST00000558855 LRRC37AA6NMS7 1700 aa17.77■□□□□ 0.44
VPS18-203ENST00000558855 HOXA10P31260 410 aaPredicted RBP17.76■□□□□ 0.43
VPS18-203ENST00000558855 PCNTO95613 3336 aa17.76■□□□□ 0.43
VPS18-203ENST00000558855 DUOX1Q9NRD9 1551 aa17.75■□□□□ 0.43
VPS18-203ENST00000558855 TCERG1O14776 1098 aaKnown RBP17.75■□□□□ 0.43
VPS18-203ENST00000558855 ALDH1B1P30837 517 aa17.74■□□□□ 0.43
VPS18-203ENST00000558855 IARSP41252 1262 aaKnown RBP17.74■□□□□ 0.43
VPS18-203ENST00000558855 DPY19L2Q6NUT2 758 aa17.74■□□□□ 0.43
VPS18-203ENST00000558855 NLRP10Q86W26 655 aa17.74■□□□□ 0.43
VPS18-203ENST00000558855 KLRG1Q96E93 195 aa17.74■□□□□ 0.43
VPS18-203ENST00000558855 DDX21Q9NR30 783 aaKnown RBP eCLIP17.74■□□□□ 0.43
VPS18-203ENST00000558855 MBIPQ9NS73 344 aa17.74■□□□□ 0.43
VPS18-203ENST00000558855 APAF1O14727 1248 aa17.73■□□□□ 0.43
VPS18-203ENST00000558855 ZNF853P0CG23 659 aa17.73■□□□□ 0.43
VPS18-203ENST00000558855 RPGRQ92834 1020 aaKnown RBP17.73■□□□□ 0.43
VPS18-203ENST00000558855 L3MBTL3Q96JM7 780 aaPredicted RBP17.73■□□□□ 0.43
VPS18-203ENST00000558855 ABCC4O15439 1325 aa17.72■□□□□ 0.43
VPS18-203ENST00000558855 HCLS1P14317 486 aaPredicted RBP17.72■□□□□ 0.43
VPS18-203ENST00000558855 PARP10Q53GL7 1025 aa17.72■□□□□ 0.43
VPS18-203ENST00000558855 RTKN2Q8IZC4 609 aa17.72■□□□□ 0.43
VPS18-203ENST00000558855 UTP14AQ9BVJ6 771 aaKnown RBP17.72■□□□□ 0.43
VPS18-203ENST00000558855 FZD9O00144 591 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 PPEF1O14829 653 aaPredicted RBP17.71■□□□□ 0.43
VPS18-203ENST00000558855 SLC10A5Q5PT55 438 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 HDGFL1Q5TGJ6 251 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 PPP1R42Q7Z4L9 355 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 JMYQ8N9B5 988 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 CRAMP1Q96RY5 1269 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 PSMD1Q99460 953 aa17.71■□□□□ 0.43
VPS18-203ENST00000558855 TAF1DQ9H5J8 278 aaPredicted RBP17.71■□□□□ 0.43
VPS18-203ENST00000558855 RNF123Q5XPI4 1314 aa17.71■□□□□ 0.42
VPS18-203ENST00000558855 TCIRG1Q13488 830 aa17.7■□□□□ 0.42
VPS18-203ENST00000558855 DUSP27Q5VZP5 1158 aa17.7■□□□□ 0.42
VPS18-203ENST00000558855 CFAP44Q96MT7 982 aa17.7■□□□□ 0.42
VPS18-203ENST00000558855 CHADLQ6NUI6 762 aa17.69■□□□□ 0.42
VPS18-203ENST00000558855 RBM17Q96I25 401 aaKnown RBP17.69■□□□□ 0.42
VPS18-203ENST00000558855 NLRP3Q96P20 1036 aa17.68■□□□□ 0.42
VPS18-203ENST00000558855 ATP5J2-PTCD1G3V325 749 aa17.67■□□□□ 0.42
VPS18-203ENST00000558855 ELL2O00472 640 aaPredicted RBP17.67■□□□□ 0.42
VPS18-203ENST00000558855 ISCA1Q9BUE6 129 aa17.67■□□□□ 0.42
VPS18-203ENST00000558855 PHAXQ9H814 394 aaKnown RBP17.67■□□□□ 0.42
VPS18-203ENST00000558855 SPEF2Q9C093 1822 aa17.67■□□□□ 0.42
VPS18-203ENST00000558855 PASKQ96RG2 1323 aa17.67■□□□□ 0.42
VPS18-203ENST00000558855 HOXB7P09629 217 aa17.66■□□□□ 0.42
VPS18-203ENST00000558855 AOC3Q16853 763 aa17.66■□□□□ 0.42
VPS18-203ENST00000558855 IFFO2Q5TF58 517 aa17.66■□□□□ 0.42
VPS18-203ENST00000558855 C8orf58Q8NAV2 365 aa17.66■□□□□ 0.42
VPS18-203ENST00000558855 PLBD2Q8NHP8 589 aa17.66■□□□□ 0.42
VPS18-203ENST00000558855 TRMT112Q9UI30 125 aaKnown RBP17.66■□□□□ 0.42
VPS18-203ENST00000558855 ATP6V0A2Q9Y487 856 aa17.66■□□□□ 0.42
VPS18-203ENST00000558855 HSP90AB3PQ58FF7 597 aa17.65■□□□□ 0.42
VPS18-203ENST00000558855 RTL5Q5HYW3 569 aaPredicted RBP17.65■□□□□ 0.42
VPS18-203ENST00000558855 FAM89AQ96GI7 184 aa17.65■□□□□ 0.42
VPS18-203ENST00000558855 SH3TC1Q8TE82 1336 aa17.65■□□□□ 0.42
VPS18-203ENST00000558855 ITGBL1O95965 494 aaPredicted RBP17.64■□□□□ 0.41
VPS18-203ENST00000558855 EPHX2P34913 555 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 SCNN1DP51172 638 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 EAPPQ56P03 285 aaPredicted RBP17.64■□□□□ 0.41
VPS18-203ENST00000558855 CC2D2BQ6DHV5 1058 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 LDHDQ86WU2 507 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 LARGE2Q8N3Y3 721 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 TSPYL6Q8N831 410 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 IFT57Q9NWB7 429 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 DBF4Q9UBU7 674 aaPredicted RBP17.64■□□□□ 0.41
VPS18-203ENST00000558855 HACL1Q9UJ83 578 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 GJA3Q9Y6H8 435 aa17.64■□□□□ 0.41
VPS18-203ENST00000558855 TRPM7Q96QT4 1865 aa17.63■□□□□ 0.41
VPS18-203ENST00000558855 SCN9AQ15858 1988 aa17.63■□□□□ 0.41
VPS18-203ENST00000558855 IQCA1LA6NCM1 817 aa17.63■□□□□ 0.41
VPS18-203ENST00000558855 FMR1Q06787 632 aaKnown RBP eCLIP17.63■□□□□ 0.413e-7■■■□□ 15.5
VPS18-203ENST00000558855 ANKRD13DQ6ZTN6 518 aa17.63■□□□□ 0.41
VPS18-203ENST00000558855 GPC2Q8N158 579 aa17.63■□□□□ 0.41
VPS18-203ENST00000558855 PPIP5K2O43314 1243 aa17.62■□□□□ 0.41
VPS18-203ENST00000558855 EPS15P42566 896 aa17.62■□□□□ 0.41
VPS18-203ENST00000558855 MAP1SQ66K74 1059 aaPredicted RBP17.62■□□□□ 0.41
VPS18-203ENST00000558855 CELF1Q92879 486 aaKnown RBP17.62■□□□□ 0.41
VPS18-203ENST00000558855 TSR2Q969E8 191 aaKnown RBP17.62■□□□□ 0.41
VPS18-203ENST00000558855 MKRN1Q9UHC7 482 aaKnown RBP17.62■□□□□ 0.41
VPS18-203ENST00000558855 MYH3P11055 1940 aa17.62■□□□□ 0.41
VPS18-203ENST00000558855 GRAPQ13588 217 aa17.61■□□□□ 0.41
VPS18-203ENST00000558855 COL13A1Q5TAT6 717 aaPredicted RBP17.61■□□□□ 0.41
VPS18-203ENST00000558855 GRAPLQ8TC17 118 aaPredicted RBP17.61■□□□□ 0.41
VPS18-203ENST00000558855 JDP2Q8WYK2 163 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms