RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 AIMP1Q12904 312 aaKnown RBP19.09■□□□□ 0.65
SHMT2-235ENST00000557740 HSP90AB3PQ58FF7 597 aa19.09■□□□□ 0.65
SHMT2-235ENST00000557740 CC2D2BQ6DHV5 1058 aa19.09■□□□□ 0.65
SHMT2-235ENST00000557740 XAGE3Q8WTP9 111 aa19.09■□□□□ 0.65
SHMT2-235ENST00000557740 KLRG1Q96E93 195 aa19.09■□□□□ 0.65
SHMT2-235ENST00000557740 RBM17Q96I25 401 aaKnown RBP19.09■□□□□ 0.65
SHMT2-235ENST00000557740 UTP14AQ9BVJ6 771 aaKnown RBP19.09■□□□□ 0.65
SHMT2-235ENST00000557740 IQCA1LA6NCM1 817 aa19.08■□□□□ 0.64
SHMT2-235ENST00000557740 HOXA10P31260 410 aaPredicted RBP19.08■□□□□ 0.64
SHMT2-235ENST00000557740 IARSP41252 1262 aaKnown RBP19.08■□□□□ 0.64
SHMT2-235ENST00000557740 KRT24Q2M2I5 525 aa19.08■□□□□ 0.64
SHMT2-235ENST00000557740 COPS6Q7L5N1 327 aa19.08■□□□□ 0.64
SHMT2-235ENST00000557740 SYNE4Q8N205 404 aa19.08■□□□□ 0.64
SHMT2-235ENST00000557740 PSMD1Q99460 953 aa19.08■□□□□ 0.64
SHMT2-235ENST00000557740 RNF123Q5XPI4 1314 aa19.07■□□□□ 0.64
SHMT2-235ENST00000557740 ZNF541Q9H0D2 1346 aa19.07■□□□□ 0.64
SHMT2-235ENST00000557740 HDGFL1Q5TGJ6 251 aa19.07■□□□□ 0.64
SHMT2-235ENST00000557740 L3MBTL3Q96JM7 780 aaPredicted RBP19.07■□□□□ 0.64
SHMT2-235ENST00000557740 CRAMP1Q96RY5 1269 aa19.07■□□□□ 0.64
SHMT2-235ENST00000557740 DDX21Q9NR30 783 aaKnown RBP eCLIP19.07■□□□□ 0.64
SHMT2-235ENST00000557740 PPEF1O14829 653 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-235ENST00000557740 HOXB7P09629 217 aa19.06■□□□□ 0.64
SHMT2-235ENST00000557740 JDP2Q8WYK2 163 aa19.06■□□□□ 0.64
SHMT2-235ENST00000557740 NLRP3Q96P20 1036 aa19.06■□□□□ 0.64
SHMT2-235ENST00000557740 CHPF2Q9P2E5 772 aa19.06■□□□□ 0.64
SHMT2-235ENST00000557740 GRIPAP1Q4V328 841 aa19.05■□□□□ 0.64
SHMT2-235ENST00000557740 CHADLQ6NUI6 762 aa19.05■□□□□ 0.64
SHMT2-235ENST00000557740 C3orf67Q6ZVT6 689 aa19.05■□□□□ 0.64
SHMT2-235ENST00000557740 CFAP44Q96MT7 982 aa19.05■□□□□ 0.64
SHMT2-235ENST00000557740 TMX4Q9H1E5 349 aaPredicted RBP19.05■□□□□ 0.64
SHMT2-235ENST00000557740 NLRP10Q86W26 655 aa19.04■□□□□ 0.64
SHMT2-235ENST00000557740 SNED1Q8TER0 1413 aa19.04■□□□□ 0.64
SHMT2-235ENST00000557740 TCERG1O14776 1098 aaKnown RBP19.03■□□□□ 0.64
SHMT2-235ENST00000557740 TCIRG1Q13488 830 aa19.03■□□□□ 0.64
SHMT2-235ENST00000557740 FZD9O00144 591 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 POTEIP0CG38 1075 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 POTEJP0CG39 1038 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 CALD1Q05682 793 aaKnown RBP19.02■□□□□ 0.64
SHMT2-235ENST00000557740 SLC10A5Q5PT55 438 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 LDHDQ86WU2 507 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 TAF1DQ9H5J8 278 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-235ENST00000557740 MBIPQ9NS73 344 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 DBF4Q9UBU7 674 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-235ENST00000557740 TRMT112Q9UI30 125 aaKnown RBP19.02■□□□□ 0.64
SHMT2-235ENST00000557740 HACL1Q9UJ83 578 aa19.02■□□□□ 0.64
SHMT2-235ENST00000557740 APAF1O14727 1248 aa19.01■□□□□ 0.63
SHMT2-235ENST00000557740 EIF6P56537 245 aaKnown RBP19.01■□□□□ 0.63
SHMT2-235ENST00000557740 EAPPQ56P03 285 aaPredicted RBP19.01■□□□□ 0.63
SHMT2-235ENST00000557740 DUSP27Q5VZP5 1158 aa19.01■□□□□ 0.63
SHMT2-235ENST00000557740 LARGE2Q8N3Y3 721 aa19.01■□□□□ 0.63
SHMT2-235ENST00000557740 JMYQ8N9B5 988 aa19.01■□□□□ 0.63
SHMT2-235ENST00000557740 PLBD2Q8NHP8 589 aa19.01■□□□□ 0.63
SHMT2-235ENST00000557740 ABCC4O15439 1325 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 SH3TC1Q8TE82 1336 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 HCLS1P14317 486 aaPredicted RBP19■□□□□ 0.63
SHMT2-235ENST00000557740 IFFO2Q5TF58 517 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 GPC2Q8N158 579 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 IFT57Q9NWB7 429 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 HYPKQ9NX55 129 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 ANKRD36CQ5JPF3 1778 aa19■□□□□ 0.63
SHMT2-235ENST00000557740 GNAI1P63096 354 aa18.99■□□□□ 0.63
SHMT2-235ENST00000557740 ANKRD13DQ6ZTN6 518 aa18.99■□□□□ 0.63
SHMT2-235ENST00000557740 SLC51AQ86UW1 340 aa18.99■□□□□ 0.63
SHMT2-235ENST00000557740 ATP6V0A2Q9Y487 856 aa18.99■□□□□ 0.63
SHMT2-235ENST00000557740 SCN4AP35499 1836 aa18.98■□□□□ 0.63
SHMT2-235ENST00000557740 EPHX2P34913 555 aa18.98■□□□□ 0.63
SHMT2-235ENST00000557740 DDX46Q7L014 1031 aaKnown RBP18.98■□□□□ 0.63
SHMT2-235ENST00000557740 NIM1KQ8IY84 436 aa18.98■□□□□ 0.63
SHMT2-235ENST00000557740 GJA3Q9Y6H8 435 aa18.98■□□□□ 0.63
SHMT2-235ENST00000557740 PPIP5K2O43314 1243 aa18.97■□□□□ 0.63
SHMT2-235ENST00000557740 ZNF853P0CG23 659 aa18.97■□□□□ 0.63
SHMT2-235ENST00000557740 PNMA8AQ86V59 439 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-235ENST00000557740 CREBZFQ9NS37 354 aa18.97■□□□□ 0.63
SHMT2-235ENST00000557740 CLEC11AQ9Y240 323 aa18.97■□□□□ 0.63
SHMT2-235ENST00000557740 COL4A5P29400 1685 aa18.97■□□□□ 0.63
SHMT2-235ENST00000557740 BBOX1O75936 387 aa18.96■□□□□ 0.63
SHMT2-235ENST00000557740 LMOD1P29536 600 aaPredicted RBP18.96■□□□□ 0.63
SHMT2-235ENST00000557740 GOLGA2Q08379 1002 aa18.96■□□□□ 0.63
SHMT2-235ENST00000557740 SUPT20HQ8NEM7 779 aa18.96■□□□□ 0.63
SHMT2-235ENST00000557740 ZNF428Q96B54 188 aa18.96■□□□□ 0.63
SHMT2-235ENST00000557740 ATP5J2-PTCD1G3V325 749 aa18.95■□□□□ 0.62
SHMT2-235ENST00000557740 GRAPQ13588 217 aa18.95■□□□□ 0.62
SHMT2-235ENST00000557740 AOC3Q16853 763 aa18.95■□□□□ 0.62
SHMT2-235ENST00000557740 DPP8Q6V1X1 898 aaPredicted RBP18.95■□□□□ 0.62
SHMT2-235ENST00000557740 GRAPLQ8TC17 118 aaPredicted RBP18.95■□□□□ 0.62
SHMT2-235ENST00000557740 SP8Q8IXZ3 490 aa18.94■□□□□ 0.62
SHMT2-235ENST00000557740 ISCA1Q9BUE6 129 aa18.94■□□□□ 0.62
SHMT2-235ENST00000557740 VPS33BQ9H267 617 aa18.94■□□□□ 0.62
SHMT2-235ENST00000557740 ELL2O00472 640 aaPredicted RBP18.93■□□□□ 0.62
SHMT2-235ENST00000557740 TMC4Q7Z404 712 aa18.93■□□□□ 0.62
SHMT2-235ENST00000557740 MPNDQ8N594 471 aa18.93■□□□□ 0.62
SHMT2-235ENST00000557740 FAM89AQ96GI7 184 aa18.93■□□□□ 0.62
SHMT2-235ENST00000557740 RTFDC1Q9BY42 306 aaPredicted RBP18.93■□□□□ 0.62
SHMT2-235ENST00000557740 PASKQ96RG2 1323 aa18.93■□□□□ 0.62
SHMT2-235ENST00000557740 ZEB1P37275 1124 aaPredicted RBP18.92■□□□□ 0.62
SHMT2-235ENST00000557740 RIC3Q7Z5B4 369 aa18.92■□□□□ 0.62
SHMT2-235ENST00000557740 CHMP4AQ9BY43 222 aa18.92■□□□□ 0.62
SHMT2-235ENST00000557740 MKRN1Q9UHC7 482 aaKnown RBP18.91■□□□□ 0.62
SHMT2-235ENST00000557740 LAMB2P55268 1798 aa18.91■□□□□ 0.62
SHMT2-235ENST00000557740 SCNN1DP51172 638 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms