RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 LMOD1P29536 600 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-223ENST00000556689 PNISRQ8TF01 805 aaKnown RBP16.81■□□□□ 0.28
SHMT2-223ENST00000556689 RRP7AQ9Y3A4 280 aaKnown RBP16.81■□□□□ 0.28
SHMT2-223ENST00000556689 CACNA1SQ13698 1873 aa16.81■□□□□ 0.28
SHMT2-223ENST00000556689 MAP3K15Q6ZN16 1313 aa16.8■□□□□ 0.28
SHMT2-223ENST00000556689 NEFMP07197 916 aa16.8■□□□□ 0.28
SHMT2-223ENST00000556689 HOXA10P31260 410 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-223ENST00000556689 KIF6Q6ZMV9 814 aa16.8■□□□□ 0.28
SHMT2-223ENST00000556689 DDX21Q9NR30 783 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHMT2-223ENST00000556689 LARGE2Q8N3Y3 721 aa16.79■□□□□ 0.28
SHMT2-223ENST00000556689 RBM17Q96I25 401 aaKnown RBP16.79■□□□□ 0.28
SHMT2-223ENST00000556689 HSPA8P11142 646 aaKnown RBP16.78■□□□□ 0.28
SHMT2-223ENST00000556689 GPTP24298 496 aa16.78■□□□□ 0.28
SHMT2-223ENST00000556689 SUSD4Q5VX71 490 aa16.78■□□□□ 0.28
SHMT2-223ENST00000556689 TTLL7Q6ZT98 887 aa16.78■□□□□ 0.28
SHMT2-223ENST00000556689 CRAMP1Q96RY5 1269 aa16.78■□□□□ 0.28
SHMT2-223ENST00000556689 ABCC12Q96J65 1359 aa16.77■□□□□ 0.28
SHMT2-223ENST00000556689 TCERG1O14776 1098 aaKnown RBP16.77■□□□□ 0.28
SHMT2-223ENST00000556689 MYL6BP14649 208 aa16.77■□□□□ 0.28
SHMT2-223ENST00000556689 EPS15P42566 896 aa16.77■□□□□ 0.28
SHMT2-223ENST00000556689 SCNN1DP51172 638 aa16.77■□□□□ 0.28
SHMT2-223ENST00000556689 EIF4A1P60842 406 aaKnown RBP16.77■□□□□ 0.28
SHMT2-223ENST00000556689 USP50Q70EL3 339 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-223ENST00000556689 TMX4Q9H1E5 349 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-223ENST00000556689 SNED1Q8TER0 1413 aa16.77■□□□□ 0.27
SHMT2-223ENST00000556689 PPEF1O14829 653 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-223ENST00000556689 ECE1P42892 770 aa16.76■□□□□ 0.27
SHMT2-223ENST00000556689 ZNF34Q8IZ26 560 aa16.76■□□□□ 0.27
SHMT2-223ENST00000556689 ZBTB3Q9H5J0 574 aa16.76■□□□□ 0.27
SHMT2-223ENST00000556689 UBN2Q6ZU65 1347 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 ADAMTSL1Q8N6G6 1762 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 FMR1Q06787 632 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHMT2-223ENST00000556689 PAXIP1Q6ZW49 1069 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-223ENST00000556689 PPP1R42Q7Z4L9 355 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 NIM1KQ8IY84 436 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 CAPNS2Q96L46 248 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 NLRP3Q96P20 1036 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 BEGAINQ9BUH8 593 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 VPS33BQ9H267 617 aa16.75■□□□□ 0.27
SHMT2-223ENST00000556689 CST9Q5W186 159 aa16.74■□□□□ 0.27
SHMT2-223ENST00000556689 GIGYF2Q6Y7W6 1299 aaKnown RBP16.74■□□□□ 0.27
SHMT2-223ENST00000556689 ABHD8Q96I13 439 aa16.74■□□□□ 0.27
SHMT2-223ENST00000556689 GPR101Q96P66 508 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-223ENST00000556689 IBTKQ9P2D0 1353 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-223ENST00000556689 PPIP5K2O43314 1243 aa16.73■□□□□ 0.27
SHMT2-223ENST00000556689 NTSR2O95665 410 aa16.73■□□□□ 0.27
SHMT2-223ENST00000556689 ADARB2Q9NS39 739 aaKnown RBP16.73■□□□□ 0.27
SHMT2-223ENST00000556689 RIC1Q4ADV7 1423 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 TRAF5O00463 557 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 GRM1Q13255 1194 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 PARP10Q53GL7 1025 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 CYP4F22Q6NT55 531 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 C3orf67Q6ZVT6 689 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 PLEKHF1Q96S99 279 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 ATP6V0A2Q9Y487 856 aa16.72■□□□□ 0.27
SHMT2-223ENST00000556689 NFE2L2Q16236 605 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 AOC3Q16853 763 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 SLC10A5Q5PT55 438 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 SLC51AQ86UW1 340 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 SUPT20HQ8NEM7 779 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 THUMPD2Q9BTF0 503 aaKnown RBP16.71■□□□□ 0.27
SHMT2-223ENST00000556689 UTP14AQ9BVJ6 771 aaKnown RBP16.71■□□□□ 0.27
SHMT2-223ENST00000556689 PNNQ9H307 717 aaKnown RBP16.71■□□□□ 0.27
SHMT2-223ENST00000556689 GPRC5DQ9NZD1 345 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 ZNRF3Q9ULT6 936 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 TLL2Q9Y6L7 1015 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 COL4A5P29400 1685 aa16.71■□□□□ 0.27
SHMT2-223ENST00000556689 ERBB4Q15303 1308 aa16.7■□□□□ 0.26
SHMT2-223ENST00000556689 MAP2K2P36507 400 aa16.7■□□□□ 0.26
SHMT2-223ENST00000556689 CXCL9Q07325 125 aa16.7■□□□□ 0.26
SHMT2-223ENST00000556689 BBOX1O75936 387 aa16.69■□□□□ 0.26
SHMT2-223ENST00000556689 RTFDC1Q9BY42 306 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-223ENST00000556689 EIF2S2P20042 333 aaKnown RBP16.68■□□□□ 0.26
SHMT2-223ENST00000556689 SP8Q8IXZ3 490 aa16.68■□□□□ 0.26
SHMT2-223ENST00000556689 TSPYL4Q9UJ04 414 aa16.68■□□□□ 0.26
SHMT2-223ENST00000556689 CCDC85CA6NKD9 419 aa16.67■□□□□ 0.26
SHMT2-223ENST00000556689 CELF2O95319 508 aaKnown RBP16.67■□□□□ 0.26
SHMT2-223ENST00000556689 GMPSP49915 693 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-223ENST00000556689 DPP8Q6V1X1 898 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-223ENST00000556689 SAPCD2Q86UD0 394 aa16.67■□□□□ 0.26
SHMT2-223ENST00000556689 PGAP2Q9UHJ9 254 aa16.67■□□□□ 0.26
SHMT2-223ENST00000556689 LTBP1Q14766 1721 aa16.67■□□□□ 0.26
SHMT2-223ENST00000556689 ABCC4O15439 1325 aa16.67■□□□□ 0.26
SHMT2-223ENST00000556689 MAPK8IP3Q9UPT6 1336 aa16.67■□□□□ 0.26
SHMT2-223ENST00000556689 NUP98P52948 1817 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 AOC2O75106 756 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 TNIP1Q15025 636 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 PDIA6Q15084 440 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 FAM161AQ3B820 660 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 CIAPIN1Q6FI81 312 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 LRP10Q7Z4F1 713 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 MPNDQ8N594 471 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 ZC3H15Q8WU90 426 aaKnown RBP16.66■□□□□ 0.26
SHMT2-223ENST00000556689 BCL2L13Q9BXK5 485 aa16.66■□□□□ 0.26
SHMT2-223ENST00000556689 CA12O43570 354 aa16.65■□□□□ 0.26
SHMT2-223ENST00000556689 HSP90AB3PQ58FF7 597 aa16.65■□□□□ 0.26
SHMT2-223ENST00000556689 HHIPL1Q96JK4 782 aa16.65■□□□□ 0.26
SHMT2-223ENST00000556689 TSKSQ9UJT2 592 aa16.65■□□□□ 0.26
SHMT2-223ENST00000556689 LAMB4A4D0S4 1761 aa16.64■□□□□ 0.25
SHMT2-223ENST00000556689 RAD17O75943 681 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms