RNA–Protein interactions for RNA: ENST00000553801.1

SYNE2-211, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-211ENST00000553801 RRP7AQ9Y3A4 280 aaKnown RBP23.48■■□□□ 1.35
SYNE2-211ENST00000553801 ADAMTSL1Q8N6G6 1762 aa23.47■■□□□ 1.35
SYNE2-211ENST00000553801 RASSF10A6NK89 507 aa23.47■■□□□ 1.35
SYNE2-211ENST00000553801 LMOD1P29536 600 aaPredicted RBP23.47■■□□□ 1.35
SYNE2-211ENST00000553801 HOXA10P31260 410 aaPredicted RBP23.47■■□□□ 1.35
SYNE2-211ENST00000553801 ABCC12Q96J65 1359 aa23.47■■□□□ 1.35
SYNE2-211ENST00000553801 NUP98P52948 1817 aa23.47■■□□□ 1.35
SYNE2-211ENST00000553801 RBM17Q96I25 401 aaKnown RBP23.46■■□□□ 1.35
SYNE2-211ENST00000553801 IBTKQ9P2D0 1353 aaPredicted RBP23.46■■□□□ 1.35
SYNE2-211ENST00000553801 GJA3Q9Y6H8 435 aa23.46■■□□□ 1.35
SYNE2-211ENST00000553801 SNED1Q8TER0 1413 aa23.45■■□□□ 1.34
SYNE2-211ENST00000553801 EIF4A1P60842 406 aaKnown RBP23.45■■□□□ 1.34
SYNE2-211ENST00000553801 LARGE2Q8N3Y3 721 aa23.45■■□□□ 1.34
SYNE2-211ENST00000553801 CRAMP1Q96RY5 1269 aa23.45■■□□□ 1.34
SYNE2-211ENST00000553801 RIC1Q4ADV7 1423 aa23.44■■□□□ 1.34
SYNE2-211ENST00000553801 MYL6BP14649 208 aa23.44■■□□□ 1.34
SYNE2-211ENST00000553801 GPTP24298 496 aa23.44■■□□□ 1.34
SYNE2-211ENST00000553801 TTLL7Q6ZT98 887 aa23.44■■□□□ 1.34
SYNE2-211ENST00000553801 TMX4Q9H1E5 349 aaPredicted RBP23.44■■□□□ 1.34
SYNE2-211ENST00000553801 ABT1Q9ULW3 272 aaKnown RBP23.44■■□□□ 1.34
SYNE2-211ENST00000553801 MAP2K1Q02750 393 aaPredicted RBP23.43■■□□□ 1.34
SYNE2-211ENST00000553801 WDR33Q9C0J8 1336 aaKnown RBP23.42■■□□□ 1.34
SYNE2-211ENST00000553801 LBX1P52954 281 aa23.42■■□□□ 1.34
SYNE2-211ENST00000553801 SUSD4Q5VX71 490 aa23.42■■□□□ 1.34
SYNE2-211ENST00000553801 PPP1R42Q7Z4L9 355 aa23.42■■□□□ 1.34
SYNE2-211ENST00000553801 PNNQ9H307 717 aaKnown RBP23.42■■□□□ 1.34
SYNE2-211ENST00000553801 ZBTB3Q9H5J0 574 aa23.42■■□□□ 1.34
SYNE2-211ENST00000553801 DDX21Q9NR30 783 aaKnown RBP eCLIP23.42■■□□□ 1.34
SYNE2-211ENST00000553801 ERBB4Q15303 1308 aa23.41■■□□□ 1.34
SYNE2-211ENST00000553801 UBN2Q6ZU65 1347 aa23.41■■□□□ 1.34
SYNE2-211ENST00000553801 PPEF1O14829 653 aaPredicted RBP23.41■■□□□ 1.34
SYNE2-211ENST00000553801 NFE2L2Q16236 605 aa23.41■■□□□ 1.34
SYNE2-211ENST00000553801 ZNF34Q8IZ26 560 aa23.41■■□□□ 1.34
SYNE2-211ENST00000553801 KDM3BQ7LBC6 1761 aa23.41■■□□□ 1.34
SYNE2-211ENST00000553801 DLG5Q8TDM6 1919 aa23.41■■□□□ 1.34
SYNE2-211ENST00000553801 PARP10Q53GL7 1025 aa23.4■■□□□ 1.34
SYNE2-211ENST00000553801 GIGYF2Q6Y7W6 1299 aaKnown RBP23.4■■□□□ 1.34
SYNE2-211ENST00000553801 USP50Q70EL3 339 aaPredicted RBP23.4■■□□□ 1.34
SYNE2-211ENST00000553801 NIM1KQ8IY84 436 aa23.4■■□□□ 1.34
SYNE2-211ENST00000553801 NLRP3Q96P20 1036 aa23.39■■□□□ 1.33
SYNE2-211ENST00000553801 PLEKHF1Q96S99 279 aa23.39■■□□□ 1.33
SYNE2-211ENST00000553801 VPS33BQ9H267 617 aa23.39■■□□□ 1.33
SYNE2-211ENST00000553801 TCERG1O14776 1098 aaKnown RBP23.38■■□□□ 1.33
SYNE2-211ENST00000553801 NTSR2O95665 410 aa23.38■■□□□ 1.33
SYNE2-211ENST00000553801 EPS15P42566 896 aa23.38■■□□□ 1.33
SYNE2-211ENST00000553801 SCNN1DP51172 638 aa23.38■■□□□ 1.33
SYNE2-211ENST00000553801 PPIP5K2O43314 1243 aa23.37■■□□□ 1.33
SYNE2-211ENST00000553801 HSPA8P11142 646 aaKnown RBP23.37■■□□□ 1.33
SYNE2-211ENST00000553801 ECE1P42892 770 aa23.37■■□□□ 1.33
SYNE2-211ENST00000553801 MAPK8IP3Q9UPT6 1336 aa23.36■■□□□ 1.33
SYNE2-211ENST00000553801 COL4A5P29400 1685 aa23.36■■□□□ 1.33
SYNE2-211ENST00000553801 THUMPD2Q9BTF0 503 aaKnown RBP23.36■■□□□ 1.33
SYNE2-211ENST00000553801 PAXIP1Q6ZW49 1069 aaPredicted RBP23.35■■□□□ 1.33
SYNE2-211ENST00000553801 SUPT20HQ8NEM7 779 aa23.35■■□□□ 1.33
SYNE2-211ENST00000553801 BEGAINQ9BUH8 593 aa23.35■■□□□ 1.33
SYNE2-211ENST00000553801 UTP14AQ9BVJ6 771 aaKnown RBP23.35■■□□□ 1.33
SYNE2-211ENST00000553801 ATP6V0A2Q9Y487 856 aa23.35■■□□□ 1.33
SYNE2-211ENST00000553801 SLC10A5Q5PT55 438 aa23.34■■□□□ 1.33
SYNE2-211ENST00000553801 CAPNS2Q96L46 248 aa23.34■■□□□ 1.33
SYNE2-211ENST00000553801 LTBP1Q14766 1721 aa23.33■■□□□ 1.33
SYNE2-211ENST00000553801 C3orf67Q6ZVT6 689 aa23.33■■□□□ 1.33
SYNE2-211ENST00000553801 ADARB2Q9NS39 739 aaKnown RBP23.33■■□□□ 1.33
SYNE2-211ENST00000553801 TSPYL4Q9UJ04 414 aa23.33■■□□□ 1.33
SYNE2-211ENST00000553801 AOC3Q16853 763 aa23.32■■□□□ 1.32
SYNE2-211ENST00000553801 GPR101Q96P66 508 aaPredicted RBP23.32■■□□□ 1.32
SYNE2-211ENST00000553801 GPRC5DQ9NZD1 345 aa23.32■■□□□ 1.32
SYNE2-211ENST00000553801 ZNRF3Q9ULT6 936 aa23.32■■□□□ 1.32
SYNE2-211ENST00000553801 TRPM7Q96QT4 1865 aa23.32■■□□□ 1.32
SYNE2-211ENST00000553801 BBOX1O75936 387 aa23.31■■□□□ 1.32
SYNE2-211ENST00000553801 EIF2S2P20042 333 aaKnown RBP23.31■■□□□ 1.32
SYNE2-211ENST00000553801 FMR1Q06787 632 aaKnown RBP eCLIP23.3■■□□□ 1.32
SYNE2-211ENST00000553801 HSP90AB3PQ58FF7 597 aa23.3■■□□□ 1.32
SYNE2-211ENST00000553801 CST9Q5W186 159 aa23.3■■□□□ 1.32
SYNE2-211ENST00000553801 ABHD8Q96I13 439 aa23.3■■□□□ 1.32
SYNE2-211ENST00000553801 RTFDC1Q9BY42 306 aaPredicted RBP23.3■■□□□ 1.32
SYNE2-211ENST00000553801 BABAM1Q9NWV8 329 aa23.3■■□□□ 1.32
SYNE2-211ENST00000553801 TLL2Q9Y6L7 1015 aa23.3■■□□□ 1.32
SYNE2-211ENST00000553801 TRAF5O00463 557 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 CXCL9Q07325 125 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 GRM1Q13255 1194 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 PDIA6Q15084 440 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 CYP4F22Q6NT55 531 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 DPP8Q6V1X1 898 aaPredicted RBP23.29■■□□□ 1.32
SYNE2-211ENST00000553801 SLC51AQ86UW1 340 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 SP8Q8IXZ3 490 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 ABCC4O15439 1325 aa23.29■■□□□ 1.32
SYNE2-211ENST00000553801 LRP10Q7Z4F1 713 aa23.28■■□□□ 1.32
SYNE2-211ENST00000553801 MPNDQ8N594 471 aa23.28■■□□□ 1.32
SYNE2-211ENST00000553801 MAP2K2P36507 400 aa23.27■■□□□ 1.32
SYNE2-211ENST00000553801 CIAPIN1Q6FI81 312 aa23.27■■□□□ 1.32
SYNE2-211ENST00000553801 GMPSP49915 693 aaPredicted RBP23.26■■□□□ 1.31
SYNE2-211ENST00000553801 RIPK4P57078 832 aa23.26■■□□□ 1.31
SYNE2-211ENST00000553801 TNIP1Q15025 636 aa23.26■■□□□ 1.31
SYNE2-211ENST00000553801 DDX46Q7L014 1031 aaKnown RBP23.26■■□□□ 1.31
SYNE2-211ENST00000553801 BCL2L13Q9BXK5 485 aa23.26■■□□□ 1.31
SYNE2-211ENST00000553801 CDHR2Q9BYE9 1310 aa23.26■■□□□ 1.31
SYNE2-211ENST00000553801 LMOD3Q0VAK6 560 aa23.25■■□□□ 1.31
SYNE2-211ENST00000553801 KIAA2012Q0VF49 1180 aa23.25■■□□□ 1.31
SYNE2-211ENST00000553801 THSD7BQ9C0I4 1608 aa23.25■■□□□ 1.31
SYNE2-211ENST00000553801 CELF2O95319 508 aaKnown RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms