RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HOXB4P17483 251 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-208ENST00000551691 CD33P20138 364 aa6.04□□□□□ -1.44
LIMA1-208ENST00000551691 GOLGA6L1Q8N7Z2 621 aa6.04□□□□□ -1.44
LIMA1-208ENST00000551691 PLPP7Q8NBV4 271 aa6.04□□□□□ -1.44
LIMA1-208ENST00000551691 LRRC4BQ9NT99 713 aa6.04□□□□□ -1.44
LIMA1-208ENST00000551691 DNAAF2Q9NVR5 837 aaKnown RBP6.04□□□□□ -1.44
LIMA1-208ENST00000551691 PHLDB1Q86UU1 1377 aa6.04□□□□□ -1.44
LIMA1-208ENST00000551691 FER1L4A9Z1Z3 1794 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 AKNAQ7Z591 1439 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 BAG6P46379 1132 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 LBRQ14739 615 aaKnown RBP6.03□□□□□ -1.44
LIMA1-208ENST00000551691 ARSJQ5FYB0 599 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-208ENST00000551691 XP32Q5T750 250 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 HDGFL1Q5TGJ6 251 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 LINC00114Q6XXX2 140 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 SLCO4C1Q6ZQN7 724 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 CRISPLD1Q9H336 500 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 USTQ9Y2C2 406 aa6.03□□□□□ -1.44
LIMA1-208ENST00000551691 FANCAO15360 1455 aa6.02□□□□□ -1.44
LIMA1-208ENST00000551691 IQGAP2Q13576 1575 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 TTC37Q6PGP7 1564 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 NCOA1Q15788 1441 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 A0A1W2PNR3 127 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 TMEM229AB2RXF0 380 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 KHNYNO15037 678 aaKnown RBP6.02□□□□□ -1.45
LIMA1-208ENST00000551691 ATXN7O15265 892 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-208ENST00000551691 SMTNP53814 917 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 KCNA1Q09470 495 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 BTBD6Q96KE9 485 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 NIFKQ9BYG3 293 aaKnown RBP6.02□□□□□ -1.45
LIMA1-208ENST00000551691 CABP1Q9NZU7 370 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 KLF15Q9UIH9 416 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 DENND4BO75064 1496 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-208ENST00000551691 ATP10BO94823 1461 aa6.02□□□□□ -1.45
LIMA1-208ENST00000551691 ARHGEF40Q8TER5 1519 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 SETD1BQ9UPS6 1966 aaKnown RBP6.01□□□□□ -1.45
LIMA1-208ENST00000551691 K7ELQ4 463 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-208ENST00000551691 BRD1O95696 1058 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 MAPTP10636 758 aaKnown RBP6.01□□□□□ -1.45
LIMA1-208ENST00000551691 EPXP11678 715 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 RBM25P49756 843 aaKnown RBP6.01□□□□□ -1.45
LIMA1-208ENST00000551691 PCBP4P57723 403 aaKnown RBP6.01□□□□□ -1.45
LIMA1-208ENST00000551691 CHIC2Q9UKJ5 165 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 MTMR7Q9Y216 660 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 PCDHGC4Q9Y5F7 938 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 NEO1Q92859 1461 aa6.01□□□□□ -1.45
LIMA1-208ENST00000551691 ARHGEF12Q9NZN5 1544 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 SETD1AO15047 1707 aaKnown RBP6□□□□□ -1.45
LIMA1-208ENST00000551691 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6□□□□□ -1.45
LIMA1-208ENST00000551691 C1QTNF9BB2RNN3 333 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 SEMA3FQ13275 785 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 TBCELQ5QJ74 424 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 FCHSD1Q86WN1 690 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 SIRT1Q96EB6 747 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 STRN4Q9NRL3 753 aa6□□□□□ -1.45
LIMA1-208ENST00000551691 FHOD3Q2V2M9 1422 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 ABCA8O94911 1581 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 ARAFP10398 606 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 TXLNAP40222 546 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 CHRNA4P43681 627 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 TNP2Q05952 138 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 FIGNL1Q6PIW4 674 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 CHSY3Q70JA7 882 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 ZNF295-AS1Q8N0V1 137 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 ZIC5Q96T25 663 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 GJA3Q9Y6H8 435 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 KIAA0556O60303 1618 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 CAMSAP1Q5T5Y3 1602 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 KIF27Q86VH2 1401 aa5.99□□□□□ -1.45
LIMA1-208ENST00000551691 A6NJY4 79 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 GNB5O14775 395 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 SKIP12755 728 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 LMOD1P29536 600 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-208ENST00000551691 SOX11P35716 441 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 DGKGP49619 791 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 PSME1Q06323 249 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 NBPF1Q3BBV0 1214 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 B4GALNT3Q6L9W6 998 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 BICDL1Q6ZP65 573 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 CD163Q86VB7 1156 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 DEPDC4Q8N2C3 294 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.98□□□□□ -1.45
LIMA1-208ENST00000551691 IQSEC3Q9UPP2 1182 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-208ENST00000551691 RICTORQ6R327 1708 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 ABCA9Q8IUA7 1624 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 ZFYVE16Q7Z3T8 1539 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 UGGT2Q9NYU1 1516 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 TRAPPC8Q9Y2L5 1435 aa5.98□□□□□ -1.45
LIMA1-208ENST00000551691 ALKQ9UM73 1620 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 TATP17735 454 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-208ENST00000551691 MAP7D1Q3KQU3 841 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 NLRP8Q86W28 1048 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 ZDHHC1Q8WTX9 485 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 FOXD4L4Q8WXT5 416 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-208ENST00000551691 PPP1R12CQ9BZL4 782 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 PRR12Q9ULL5 1215 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 PCDHGA11Q9Y5H2 935 aa5.97□□□□□ -1.45
LIMA1-208ENST00000551691 ATP10AO60312 1499 aa5.96□□□□□ -1.45
LIMA1-208ENST00000551691 HECW1Q76N89 1606 aa5.96□□□□□ -1.45
LIMA1-208ENST00000551691 ADH6P28332 368 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms