RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 NUP98P52948 1817 aa15.37■□□□□ 0.05
SMARCD1-208ENST00000550280 IBTKQ9P2D0 1353 aaPredicted RBP15.36■□□□□ 0.05
SMARCD1-208ENST00000550280 MYL6BP14649 208 aa15.36■□□□□ 0.05
SMARCD1-208ENST00000550280 ALDH1B1P30837 517 aa15.36■□□□□ 0.05
SMARCD1-208ENST00000550280 PDIA6Q15084 440 aa15.36■□□□□ 0.05
SMARCD1-208ENST00000550280 EAPPQ56P03 285 aaPredicted RBP15.36■□□□□ 0.05
SMARCD1-208ENST00000550280 VEGFBP49765 207 aa15.35■□□□□ 0.05
SMARCD1-208ENST00000550280 MAP1SQ66K74 1059 aaPredicted RBP15.35■□□□□ 0.05
SMARCD1-208ENST00000550280 PNISRQ8TF01 805 aaKnown RBP15.35■□□□□ 0.05
SMARCD1-208ENST00000550280 TMEM88BA6NKF7 163 aa15.34■□□□□ 0.05
SMARCD1-208ENST00000550280 GTF2E1P29083 439 aaPredicted RBP15.34■□□□□ 0.05
SMARCD1-208ENST00000550280 FMR1Q06787 632 aaKnown RBP eCLIP15.34■□□□□ 0.05
SMARCD1-208ENST00000550280 PROSER3Q2NL68 480 aa15.34■□□□□ 0.05
SMARCD1-208ENST00000550280 GPC2Q8N158 579 aa15.34■□□□□ 0.05
SMARCD1-208ENST00000550280 NYXQ9GZU5 481 aa15.34■□□□□ 0.05
SMARCD1-208ENST00000550280 ANXA1P04083 346 aa15.33■□□□□ 0.04
SMARCD1-208ENST00000550280 SCNN1DP51172 638 aa15.33■□□□□ 0.04
SMARCD1-208ENST00000550280 GIGYF2Q6Y7W6 1299 aaKnown RBP15.33■□□□□ 0.04
SMARCD1-208ENST00000550280 KIF6Q6ZMV9 814 aa15.32■□□□□ 0.04
SMARCD1-208ENST00000550280 CNTROBQ8N137 903 aa15.32■□□□□ 0.04
SMARCD1-208ENST00000550280 CRAMP1Q96RY5 1269 aa15.32■□□□□ 0.04
SMARCD1-208ENST00000550280 RASSF10A6NK89 507 aa15.31■□□□□ 0.04
SMARCD1-208ENST00000550280 TCERG1O14776 1098 aaKnown RBP15.31■□□□□ 0.04
SMARCD1-208ENST00000550280 EPS15P42566 896 aa15.31■□□□□ 0.04
SMARCD1-208ENST00000550280 CC2D2BQ6DHV5 1058 aa15.31■□□□□ 0.04
SMARCD1-208ENST00000550280 WBP1LQ9NX94 342 aa15.31■□□□□ 0.04
SMARCD1-208ENST00000550280 CLEC11AQ9Y240 323 aa15.31■□□□□ 0.04
SMARCD1-208ENST00000550280 PPEF1O14829 653 aaPredicted RBP15.3■□□□□ 0.04
SMARCD1-208ENST00000550280 ERBB4Q15303 1308 aa15.3■□□□□ 0.04
SMARCD1-208ENST00000550280 PNMA8AQ86V59 439 aaPredicted RBP15.3■□□□□ 0.04
SMARCD1-208ENST00000550280 RPGRQ92834 1020 aaKnown RBP15.3■□□□□ 0.04
SMARCD1-208ENST00000550280 GJA3Q9Y6H8 435 aa15.3■□□□□ 0.04
SMARCD1-208ENST00000550280 JDP2Q8WYK2 163 aa15.29■□□□□ 0.04
SMARCD1-208ENST00000550280 TSPYL4Q9UJ04 414 aa15.29■□□□□ 0.04
SMARCD1-208ENST00000550280 ABCC4O15439 1325 aa15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 EIF2S2P20042 333 aaKnown RBP15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 KRT24Q2M2I5 525 aa15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 SLC10A5Q5PT55 438 aa15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 LARGE2Q8N3Y3 721 aa15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 RBM17Q96I25 401 aaKnown RBP15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 PRDM10Q9NQV6 1147 aa15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 DDX21Q9NR30 783 aaKnown RBP eCLIP15.28■□□□□ 0.04
SMARCD1-208ENST00000550280 NEFMP07197 916 aa15.27■□□□□ 0.04
SMARCD1-208ENST00000550280 EIF6P56537 245 aaKnown RBP15.27■□□□□ 0.04
SMARCD1-208ENST00000550280 AOC3Q16853 763 aa15.27■□□□□ 0.04
SMARCD1-208ENST00000550280 PARP10Q53GL7 1025 aa15.27■□□□□ 0.04
SMARCD1-208ENST00000550280 ATP6V0A2Q9Y487 856 aa15.27■□□□□ 0.04
SMARCD1-208ENST00000550280 MAPK8IP3Q9UPT6 1336 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 THSD7BQ9C0I4 1608 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 TRAF5O00463 557 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 RIPK4P57078 832 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 DEFB115Q30KQ5 88 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 CST9Q5W186 159 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 PPP1R42Q7Z4L9 355 aa15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 UTP14AQ9BVJ6 771 aaKnown RBP15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 RTFDC1Q9BY42 306 aaPredicted RBP15.26■□□□□ 0.03
SMARCD1-208ENST00000550280 COL4A1P02462 1669 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 WDR33Q9C0J8 1336 aaKnown RBP15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 DUOX1Q9NRD9 1551 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 PPIP5K2O43314 1243 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 HSPA8P11142 646 aaKnown RBP15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 TMPOP42166 694 aaKnown RBP15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 CTCFP49711 727 aaPredicted RBP15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 LBX1P52954 281 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 CXCL9Q07325 125 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 COPS6Q7L5N1 327 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 NLRP10Q86W26 655 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 NECTIN2Q92692 538 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 NLRP3Q96P20 1036 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 LAMB2P55268 1798 aa15.25■□□□□ 0.03
SMARCD1-208ENST00000550280 HCLS1P14317 486 aaPredicted RBP15.24■□□□□ 0.03
SMARCD1-208ENST00000550280 GRIPAP1Q4V328 841 aa15.24■□□□□ 0.03
SMARCD1-208ENST00000550280 NIM1KQ8IY84 436 aa15.24■□□□□ 0.03
SMARCD1-208ENST00000550280 XAGE3Q8WTP9 111 aa15.24■□□□□ 0.03
SMARCD1-208ENST00000550280 ZNF428Q96B54 188 aa15.24■□□□□ 0.03
SMARCD1-208ENST00000550280 GPRC5DQ9NZD1 345 aa15.24■□□□□ 0.03
SMARCD1-208ENST00000550280 LMOD1P29536 600 aaPredicted RBP15.23■□□□□ 0.03
SMARCD1-208ENST00000550280 USP50Q70EL3 339 aaPredicted RBP15.23■□□□□ 0.03
SMARCD1-208ENST00000550280 BABAM1Q9NWV8 329 aa15.23■□□□□ 0.03
SMARCD1-208ENST00000550280 ANKRD36CQ5JPF3 1778 aa15.23■□□□□ 0.03
SMARCD1-208ENST00000550280 SHTN1A0MZ66 631 aa15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 YDJCA8MPS7 323 aa15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 HIRAP54198 1017 aaPredicted RBP15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 AIMP1Q12904 312 aaKnown RBP15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 TCIRG1Q13488 830 aa15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 ABT1Q9ULW3 272 aaKnown RBP15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 TRIM35Q9UPQ4 493 aa15.22■□□□□ 0.03
SMARCD1-208ENST00000550280 CHL1O00533 1208 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 GMPSP49915 693 aaPredicted RBP15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 KIAA2012Q0VF49 1180 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 CYP4F22Q6NT55 531 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 SP8Q8IXZ3 490 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 CCDC146Q8IYE0 955 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 AIDAQ96BJ3 306 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 CAPNS2Q96L46 248 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 PNNQ9H307 717 aaKnown RBP15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 ZNRF3Q9ULT6 936 aa15.21■□□□□ 0.03
SMARCD1-208ENST00000550280 VPS33BQ9H267 617 aa15.2■□□□□ 0.02
SMARCD1-208ENST00000550280 ADARB2Q9NS39 739 aaKnown RBP15.2■□□□□ 0.02
SMARCD1-208ENST00000550280 CHPF2Q9P2E5 772 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms