RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 TNRC6CQ9HCJ0 1690 aaKnown RBP17.44■□□□□ 0.38
CPSF6-204ENST00000547486 NUP98P52948 1817 aa17.44■□□□□ 0.38
CPSF6-204ENST00000547486 APAF1O14727 1248 aa17.43■□□□□ 0.38
CPSF6-204ENST00000547486 SLC10A5Q5PT55 438 aa17.43■□□□□ 0.38
CPSF6-204ENST00000547486 RPGRQ92834 1020 aaKnown RBP17.43■□□□□ 0.38
CPSF6-204ENST00000547486 CFAP44Q96MT7 982 aa17.43■□□□□ 0.38
CPSF6-204ENST00000547486 UTP14AQ9BVJ6 771 aaKnown RBP17.43■□□□□ 0.38
CPSF6-204ENST00000547486 CHPF2Q9P2E5 772 aa17.43■□□□□ 0.38
CPSF6-204ENST00000547486 TIAM2Q8IVF5 1701 aa17.43■□□□□ 0.38
CPSF6-204ENST00000547486 SNED1Q8TER0 1413 aa17.42■□□□□ 0.38
CPSF6-204ENST00000547486 ARFGEF2Q9Y6D5 1785 aa17.42■□□□□ 0.38
CPSF6-204ENST00000547486 RIC1Q4ADV7 1423 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
CPSF6-204ENST00000547486 ZNF853P0CG23 659 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 POTEIP0CG38 1075 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 POTEJP0CG39 1038 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 TCIRG1Q13488 830 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 CCDC184Q52MB2 194 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 NLRP10Q86W26 655 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 ZNF428Q96B54 188 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 RBM17Q96I25 401 aaKnown RBP17.41■□□□□ 0.38
CPSF6-204ENST00000547486 CRAMP1Q96RY5 1269 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 MBIPQ9NS73 344 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 CACNA1SQ13698 1873 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 ZNF541Q9H0D2 1346 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 WDR90Q96KV7 1748 aa17.41■□□□□ 0.38
CPSF6-204ENST00000547486 IARSP41252 1262 aaKnown RBP17.4■□□□□ 0.38
CPSF6-204ENST00000547486 HDGFL1Q5TGJ6 251 aa17.4■□□□□ 0.38
CPSF6-204ENST00000547486 DUSP27Q5VZP5 1158 aa17.4■□□□□ 0.38
CPSF6-204ENST00000547486 NLRP3Q96P20 1036 aa17.4■□□□□ 0.38
CPSF6-204ENST00000547486 PSMD1Q99460 953 aa17.4■□□□□ 0.38
CPSF6-204ENST00000547486 FZD9O00144 591 aa17.39■□□□□ 0.37
CPSF6-204ENST00000547486 HOXB7P09629 217 aa17.39■□□□□ 0.37
CPSF6-204ENST00000547486 HCLS1P14317 486 aaPredicted RBP17.39■□□□□ 0.37
CPSF6-204ENST00000547486 L3MBTL3Q96JM7 780 aaPredicted RBP17.39■□□□□ 0.37
CPSF6-204ENST00000547486 DICER1Q9UPY3 1922 aaKnown RBP17.39■□□□□ 0.37
CPSF6-204ENST00000547486 PPEF1O14829 653 aaPredicted RBP17.38■□□□□ 0.37
CPSF6-204ENST00000547486 HSP90AB3PQ58FF7 597 aa17.38■□□□□ 0.37
CPSF6-204ENST00000547486 CC2D2BQ6DHV5 1058 aa17.38■□□□□ 0.37
CPSF6-204ENST00000547486 KLRG1Q96E93 195 aa17.38■□□□□ 0.37
CPSF6-204ENST00000547486 DBF4Q9UBU7 674 aaPredicted RBP17.38■□□□□ 0.37
CPSF6-204ENST00000547486 ANKRD13DQ6ZTN6 518 aa17.37■□□□□ 0.37
CPSF6-204ENST00000547486 PLBD2Q8NHP8 589 aa17.37■□□□□ 0.37
CPSF6-204ENST00000547486 TAF1DQ9H5J8 278 aaPredicted RBP17.37■□□□□ 0.37
CPSF6-204ENST00000547486 TRMT112Q9UI30 125 aaKnown RBP17.37■□□□□ 0.37
CPSF6-204ENST00000547486 ELL2O00472 640 aaPredicted RBP17.36■□□□□ 0.37
CPSF6-204ENST00000547486 CHADLQ6NUI6 762 aa17.36■□□□□ 0.37
CPSF6-204ENST00000547486 IFT57Q9NWB7 429 aa17.36■□□□□ 0.37
CPSF6-204ENST00000547486 JMYQ8N9B5 988 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 ISCA1Q9BUE6 129 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 ATP6V0A2Q9Y487 856 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 ABCC4O15439 1325 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 RNF123Q5XPI4 1314 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 SH3TC1Q8TE82 1336 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 COL4A5P29400 1685 aa17.35■□□□□ 0.37
CPSF6-204ENST00000547486 IQCA1LA6NCM1 817 aa17.34■□□□□ 0.37
CPSF6-204ENST00000547486 ATP5J2-PTCD1G3V325 749 aa17.34■□□□□ 0.37
CPSF6-204ENST00000547486 GNAI1P63096 354 aa17.34■□□□□ 0.37
CPSF6-204ENST00000547486 GRIPAP1Q4V328 841 aa17.34■□□□□ 0.37
CPSF6-204ENST00000547486 C8orf58Q8NAV2 365 aa17.34■□□□□ 0.37
CPSF6-204ENST00000547486 HYPKQ9NX55 129 aa17.34■□□□□ 0.37
CPSF6-204ENST00000547486 JDP2Q8WYK2 163 aa17.33■□□□□ 0.36
CPSF6-204ENST00000547486 FAM89AQ96GI7 184 aa17.33■□□□□ 0.36
CPSF6-204ENST00000547486 PHAXQ9H814 394 aaKnown RBP17.33■□□□□ 0.36
CPSF6-204ENST00000547486 BBOX1O75936 387 aa17.32■□□□□ 0.36
CPSF6-204ENST00000547486 GPC2Q8N158 579 aa17.32■□□□□ 0.36
CPSF6-204ENST00000547486 LARGE2Q8N3Y3 721 aa17.32■□□□□ 0.36
CPSF6-204ENST00000547486 HACL1Q9UJ83 578 aa17.32■□□□□ 0.36
CPSF6-204ENST00000547486 EPHX2P34913 555 aa17.31■□□□□ 0.36
CPSF6-204ENST00000547486 CALD1Q05682 793 aaKnown RBP17.31■□□□□ 0.36
CPSF6-204ENST00000547486 EAPPQ56P03 285 aaPredicted RBP17.31■□□□□ 0.36
CPSF6-204ENST00000547486 LDHDQ86WU2 507 aa17.31■□□□□ 0.36
CPSF6-204ENST00000547486 SP8Q8IXZ3 490 aa17.31■□□□□ 0.36
CPSF6-204ENST00000547486 GJA3Q9Y6H8 435 aa17.31■□□□□ 0.36
CPSF6-204ENST00000547486 ITGBL1O95965 494 aaPredicted RBP17.3■□□□□ 0.36
CPSF6-204ENST00000547486 EIF6P56537 245 aaKnown RBP17.3■□□□□ 0.36
CPSF6-204ENST00000547486 TRIM28Q13263 835 aaKnown RBP17.3■□□□□ 0.36
CPSF6-204ENST00000547486 AOC3Q16853 763 aa17.3■□□□□ 0.36
CPSF6-204ENST00000547486 RTL5Q5HYW3 569 aaPredicted RBP17.3■□□□□ 0.36
CPSF6-204ENST00000547486 DDX46Q7L014 1031 aaKnown RBP17.3■□□□□ 0.36
CPSF6-204ENST00000547486 TSPYL6Q8N831 410 aa17.3■□□□□ 0.36
CPSF6-204ENST00000547486 RTFDC1Q9BY42 306 aaPredicted RBP17.3■□□□□ 0.36
CPSF6-204ENST00000547486 PPIP5K2O43314 1243 aa17.29■□□□□ 0.36
CPSF6-204ENST00000547486 ZEB1P37275 1124 aaPredicted RBP17.29■□□□□ 0.36
CPSF6-204ENST00000547486 GRAPQ13588 217 aa17.29■□□□□ 0.36
CPSF6-204ENST00000547486 IFFO2Q5TF58 517 aa17.29■□□□□ 0.36
CPSF6-204ENST00000547486 RIC3Q7Z5B4 369 aa17.29■□□□□ 0.36
CPSF6-204ENST00000547486 GRAPLQ8TC17 118 aaPredicted RBP17.29■□□□□ 0.36
CPSF6-204ENST00000547486 TMX4Q9H1E5 349 aaPredicted RBP17.29■□□□□ 0.36
CPSF6-204ENST00000547486 PCNTO95613 3336 aa17.29■□□□□ 0.36
CPSF6-204ENST00000547486 PASKQ96RG2 1323 aa17.28■□□□□ 0.36
CPSF6-204ENST00000547486 SF3B3Q15393 1217 aaKnown RBP17.28■□□□□ 0.36
CPSF6-204ENST00000547486 DPP8Q6V1X1 898 aaPredicted RBP17.28■□□□□ 0.36
CPSF6-204ENST00000547486 MPNDQ8N594 471 aa17.28■□□□□ 0.36
CPSF6-204ENST00000547486 TSR2Q969E8 191 aaKnown RBP17.28■□□□□ 0.36
CPSF6-204ENST00000547486 CLEC11AQ9Y240 323 aa17.28■□□□□ 0.36
CPSF6-204ENST00000547486 EPS15P42566 896 aa17.27■□□□□ 0.36
CPSF6-204ENST00000547486 SCNN1DP51172 638 aa17.27■□□□□ 0.36
CPSF6-204ENST00000547486 PNMA8AQ86V59 439 aaPredicted RBP17.27■□□□□ 0.36
CPSF6-204ENST00000547486 WWC1Q8IX03 1113 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms