RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 NPR1P16066 1061 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 GOLGA2Q08379 1002 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 CRY2Q49AN0 593 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 ERFEQ4G0M1 354 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 NLRP10Q86W26 655 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 NUTM1Q86Y26 1132 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 ZNF784Q8NCA9 323 aaPredicted RBP15.3■□□□□ 0.04
YBX3-217ENST00000546164 CNKSR1Q969H4 720 aa15.3■□□□□ 0.04
YBX3-217ENST00000546164 ZNF622Q969S3 477 aaKnown RBP eCLIP15.3■□□□□ 0.04
YBX3-217ENST00000546164 UTP14AQ9BVJ6 771 aaKnown RBP15.3■□□□□ 0.04
YBX3-217ENST00000546164 SPINK5Q9NQ38 1064 aaPredicted RBP15.3■□□□□ 0.04
YBX3-217ENST00000546164 DSG3P32926 999 aa15.29■□□□□ 0.04
YBX3-217ENST00000546164 TRIM28Q13263 835 aaKnown RBP15.29■□□□□ 0.04
YBX3-217ENST00000546164 SLC10A5Q5PT55 438 aa15.29■□□□□ 0.04
YBX3-217ENST00000546164 ISCA1Q9BUE6 129 aa15.29■□□□□ 0.04
YBX3-217ENST00000546164 PHAXQ9H814 394 aaKnown RBP15.29■□□□□ 0.04
YBX3-217ENST00000546164 EXOSC9Q06265 439 aaKnown RBP15.28■□□□□ 0.04
YBX3-217ENST00000546164 STK31Q9BXU1 1019 aa15.28■□□□□ 0.04
YBX3-217ENST00000546164 ANKRD36CQ5JPF3 1778 aa15.28■□□□□ 0.04
YBX3-217ENST00000546164 VAMP4O75379 141 aa15.27■□□□□ 0.04
YBX3-217ENST00000546164 PRPF40BQ6NWY9 871 aaKnown RBP15.27■□□□□ 0.04
YBX3-217ENST00000546164 TNRC6CQ9HCJ0 1690 aaKnown RBP15.26■□□□□ 0.03
YBX3-217ENST00000546164 DDX58O95786 925 aaKnown RBP15.26■□□□□ 0.03
YBX3-217ENST00000546164 HOXA10P31260 410 aaPredicted RBP15.26■□□□□ 0.03
YBX3-217ENST00000546164 RIC3Q7Z5B4 369 aa15.26■□□□□ 0.03
YBX3-217ENST00000546164 C7orf43Q8WVR3 580 aa15.26■□□□□ 0.03
YBX3-217ENST00000546164 SH3TC1Q8TE82 1336 aa15.25■□□□□ 0.03
YBX3-217ENST00000546164 ALDH1B1P30837 517 aa15.25■□□□□ 0.03
YBX3-217ENST00000546164 SOGA3Q5TF21 947 aa15.25■□□□□ 0.03
YBX3-217ENST00000546164 TRMT112Q9UI30 125 aaKnown RBP15.25■□□□□ 0.03
YBX3-217ENST00000546164 ARFGEF2Q9Y6D5 1785 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 E9PSI1 815 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 NFKBIEO00221 500 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 C21orf2O43822 256 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 SLC4A2P04920 1241 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 C9orf131Q5VYM1 1079 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 KSR2Q6VAB6 950 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 MIER1Q8N108 512 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 NLRP3Q96P20 1036 aa15.24■□□□□ 0.03
YBX3-217ENST00000546164 METTL22Q9BUU2 404 aaPredicted RBP15.24■□□□□ 0.03
YBX3-217ENST00000546164 LTBP3Q9NS15 1303 aa15.23■□□□□ 0.03
YBX3-217ENST00000546164 SLX4Q8IY92 1834 aa15.23■□□□□ 0.03
YBX3-217ENST00000546164 ATP5J2-PTCD1G3V325 749 aa15.23■□□□□ 0.03
YBX3-217ENST00000546164 LMNB1P20700 586 aa15.23■□□□□ 0.03
YBX3-217ENST00000546164 C3orf67Q6ZVT6 689 aa15.23■□□□□ 0.03
YBX3-217ENST00000546164 RPGRQ92834 1020 aaKnown RBP15.23■□□□□ 0.03
YBX3-217ENST00000546164 CRAMP1Q96RY5 1269 aa15.23■□□□□ 0.03
YBX3-217ENST00000546164 ZC3H4Q9UPT8 1303 aaKnown RBP15.22■□□□□ 0.03
YBX3-217ENST00000546164 PI4KAP2A4QPH2 592 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 TCERG1O14776 1098 aaKnown RBP15.22■□□□□ 0.03
YBX3-217ENST00000546164 RASSF7Q02833 373 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 SLFN5Q08AF3 891 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 FLIIQ13045 1269 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 G2E3Q7L622 706 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 PI4KAP1Q8N8J0 262 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 CCDC191Q8NCU4 936 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 MAP3K2Q9Y2U5 619 aa15.22■□□□□ 0.03
YBX3-217ENST00000546164 PRELPP51888 382 aa15.21■□□□□ 0.03
YBX3-217ENST00000546164 CCDC93Q567U6 631 aa15.21■□□□□ 0.03
YBX3-217ENST00000546164 SYNE4Q8N205 404 aa15.21■□□□□ 0.03
YBX3-217ENST00000546164 RBM17Q96I25 401 aaKnown RBP15.21■□□□□ 0.03
YBX3-217ENST00000546164 MYD88Q99836 296 aa15.21■□□□□ 0.03
YBX3-217ENST00000546164 TAOK3Q9H2K8 898 aa15.21■□□□□ 0.03
YBX3-217ENST00000546164 RNF181Q9P0P0 153 aa15.21■□□□□ 0.03
YBX3-217ENST00000546164 SNED1Q8TER0 1413 aa15.2■□□□□ 0.02
YBX3-217ENST00000546164 HCLS1P14317 486 aaPredicted RBP15.2■□□□□ 0.02
YBX3-217ENST00000546164 CC2D2BQ6DHV5 1058 aa15.2■□□□□ 0.02
YBX3-217ENST00000546164 ZBTB38Q8NAP3 1195 aaPredicted RBP15.2■□□□□ 0.02
YBX3-217ENST00000546164 FAM89AQ96GI7 184 aa15.2■□□□□ 0.02
YBX3-217ENST00000546164 CWC25Q9NXE8 425 aaPredicted RBP15.2■□□□□ 0.02
YBX3-217ENST00000546164 ZNF219Q9P2Y4 722 aaPredicted RBP15.2■□□□□ 0.02
YBX3-217ENST00000546164 FER1L6Q2WGJ9 1857 aa15.2■□□□□ 0.02
YBX3-217ENST00000546164 CACNA1FO60840 1977 aa15.2■□□□□ 0.02
YBX3-217ENST00000546164 PCCAP05165 728 aaPredicted RBP15.19■□□□□ 0.02
YBX3-217ENST00000546164 IGKV5-2P06315 115 aa15.19■□□□□ 0.02
YBX3-217ENST00000546164 SF3B3Q15393 1217 aaKnown RBP15.19■□□□□ 0.02
YBX3-217ENST00000546164 TRMT2AQ8IZ69 625 aaKnown RBP15.19■□□□□ 0.02
YBX3-217ENST00000546164 RTKN2Q8IZC4 609 aa15.19■□□□□ 0.02
YBX3-217ENST00000546164 SBF1O95248 1867 aa15.18■□□□□ 0.02
YBX3-217ENST00000546164 IRS4O14654 1257 aaPredicted RBP15.18■□□□□ 0.02
YBX3-217ENST00000546164 HSP90B1P14625 803 aaKnown RBP15.18■□□□□ 0.02
YBX3-217ENST00000546164 NEXNQ0ZGT2 675 aa15.18■□□□□ 0.02
YBX3-217ENST00000546164 FKBP5Q13451 457 aaPredicted RBP15.18■□□□□ 0.02
YBX3-217ENST00000546164 GRIPAP1Q4V328 841 aa15.18■□□□□ 0.02
YBX3-217ENST00000546164 ZNF428Q96B54 188 aa15.18■□□□□ 0.02
YBX3-217ENST00000546164 GPBP1L1Q9HC44 474 aaPredicted RBP15.18■□□□□ 0.02
YBX3-217ENST00000546164 ABCC4O15439 1325 aa15.17■□□□□ 0.02
YBX3-217ENST00000546164 FKBP4Q02790 459 aaKnown RBP eCLIP15.17■□□□□ 0.02
YBX3-217ENST00000546164 DNAAF4Q8WXU2 420 aa15.17■□□□□ 0.02
YBX3-217ENST00000546164 CDCA7LQ96GN5 454 aa15.17■□□□□ 0.02
YBX3-217ENST00000546164 NEURL1BA8MQ27 555 aa15.16■□□□□ 0.02
YBX3-217ENST00000546164 PPEF1O14829 653 aaPredicted RBP15.16■□□□□ 0.02
YBX3-217ENST00000546164 CAPN15O75808 1086 aa15.16■□□□□ 0.02
YBX3-217ENST00000546164 BBOX1O75936 387 aa15.16■□□□□ 0.02
YBX3-217ENST00000546164 OLFM4Q6UX06 510 aa15.16■□□□□ 0.02
YBX3-217ENST00000546164 DDX46Q7L014 1031 aaKnown RBP15.16■□□□□ 0.02
YBX3-217ENST00000546164 PSMD1Q99460 953 aa15.16■□□□□ 0.02
YBX3-217ENST00000546164 DDX60Q8IY21 1712 aaKnown RBP15.16■□□□□ 0.02
YBX3-217ENST00000546164 CACNA1SQ13698 1873 aa15.16■□□□□ 0.02
YBX3-217ENST00000546164 CDHR2Q9BYE9 1310 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms