RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NUCB2P80303 420 aa19.76■□□□□ 0.75
COL4A1-204ENST00000543140 RUFY2Q8WXA3 655 aa19.76■□□□□ 0.75
COL4A1-204ENST00000543140 SNX14Q9Y5W7 946 aa19.76■□□□□ 0.75
COL4A1-204ENST00000543140 PAPPAQ13219 1627 aa19.76■□□□□ 0.75
COL4A1-204ENST00000543140 PTH1RQ03431 593 aa19.75■□□□□ 0.75
COL4A1-204ENST00000543140 PIGBQ92521 554 aa19.75■□□□□ 0.75
COL4A1-204ENST00000543140 CWC25Q9NXE8 425 aaPredicted RBP19.75■□□□□ 0.75
COL4A1-204ENST00000543140 BAG4O95429 457 aaKnown RBP19.75■□□□□ 0.75
COL4A1-204ENST00000543140 MCM2P49736 904 aa19.75■□□□□ 0.75
COL4A1-204ENST00000543140 FAM227BQ96M60 508 aa19.75■□□□□ 0.75
COL4A1-204ENST00000543140 H7C1W4 665 aa19.74■□□□□ 0.75
COL4A1-204ENST00000543140 EPB41L2O43491 1005 aaKnown RBP19.74■□□□□ 0.75
COL4A1-204ENST00000543140 FOXO4P98177 505 aa19.74■□□□□ 0.75
COL4A1-204ENST00000543140 IL17RAQ96F46 866 aa19.74■□□□□ 0.75
COL4A1-204ENST00000543140 TNS2Q63HR2 1409 aa19.73■□□□□ 0.75
COL4A1-204ENST00000543140 CYP2E1P05181 493 aaPredicted RBP19.73■□□□□ 0.75
COL4A1-204ENST00000543140 EDC3Q96F86 508 aaKnown RBP19.73■□□□□ 0.75
COL4A1-204ENST00000543140 CCDC9Q9Y3X0 531 aaKnown RBP19.73■□□□□ 0.75
COL4A1-204ENST00000543140 NUP188Q5SRE5 1749 aa19.73■□□□□ 0.75
COL4A1-204ENST00000543140 TNNI3KQ59H18 835 aa19.73■□□□□ 0.75
COL4A1-204ENST00000543140 FOXD4L5Q5VV16 416 aaPredicted RBP19.73■□□□□ 0.75
COL4A1-204ENST00000543140 FOXD4L4Q8WXT5 416 aaPredicted RBP19.73■□□□□ 0.75
COL4A1-204ENST00000543140 FSD1Q9BTV5 496 aa19.73■□□□□ 0.75
COL4A1-204ENST00000543140 DBNLQ9UJU6 430 aaKnown RBP19.73■□□□□ 0.75
COL4A1-204ENST00000543140 FPGT-TNNI3KV9GXZ4 949 aa19.73■□□□□ 0.75
COL4A1-204ENST00000543140 NMIQ13287 307 aaPredicted RBP19.72■□□□□ 0.75
COL4A1-204ENST00000543140 DNAJC10Q8IXB1 793 aa19.72■□□□□ 0.75
COL4A1-204ENST00000543140 LARP6Q9BRS8 491 aaKnown RBP19.72■□□□□ 0.75
COL4A1-204ENST00000543140 NDUFB9Q9Y6M9 179 aa19.72■□□□□ 0.75
COL4A1-204ENST00000543140 ZDHHC9Q9Y397 364 aa19.72■□□□□ 0.75
COL4A1-204ENST00000543140 CPA1P15085 419 aa19.71■□□□□ 0.75
COL4A1-204ENST00000543140 MCTP1Q6DN14 999 aa19.71■□□□□ 0.75
COL4A1-204ENST00000543140 PRPF40BQ6NWY9 871 aaKnown RBP19.71■□□□□ 0.75
COL4A1-204ENST00000543140 COL15A1P39059 1388 aa19.71■□□□□ 0.75
COL4A1-204ENST00000543140 GOLGA6L22H0YM25 854 aa19.71■□□□□ 0.75
COL4A1-204ENST00000543140 CLEC17AQ6ZS10 378 aa19.71■□□□□ 0.75
COL4A1-204ENST00000543140 ATG3Q9NT62 314 aa19.7■□□□□ 0.74
COL4A1-204ENST00000543140 CUL4AQ13619 759 aa19.7■□□□□ 0.74
COL4A1-204ENST00000543140 CCDC191Q8NCU4 936 aa19.7■□□□□ 0.74
COL4A1-204ENST00000543140 CHAMP1Q96JM3 812 aa19.7■□□□□ 0.74
COL4A1-204ENST00000543140 DBNDD2Q9BQY9 259 aa19.7■□□□□ 0.74
COL4A1-204ENST00000543140 ROBO1Q9Y6N7 1651 aa19.69■□□□□ 0.74
COL4A1-204ENST00000543140 A0A0D9SFI3 127 aa19.69■□□□□ 0.74
COL4A1-204ENST00000543140 SYTL4Q96C24 671 aaPredicted RBP19.69■□□□□ 0.74
COL4A1-204ENST00000543140 ITGB4P16144 1822 aa19.69■□□□□ 0.74
COL4A1-204ENST00000543140 CASTP20810 708 aaKnown RBP19.69■□□□□ 0.74
COL4A1-204ENST00000543140 ZNF594Q96JF6 807 aaPredicted RBP19.69■□□□□ 0.74
COL4A1-204ENST00000543140 TJP1Q07157 1748 aa19.69■□□□□ 0.74
COL4A1-204ENST00000543140 GOLGA6L3A6NEY3 463 aa19.68■□□□□ 0.74
COL4A1-204ENST00000543140 CCDC171Q6TFL3 1326 aa19.68■□□□□ 0.74
COL4A1-204ENST00000543140 KCNJ4P48050 445 aa19.68■□□□□ 0.74
COL4A1-204ENST00000543140 ADCK5Q3MIX3 580 aa19.68■□□□□ 0.74
COL4A1-204ENST00000543140 HIP1O00291 1037 aa19.67■□□□□ 0.74
COL4A1-204ENST00000543140 SKOR2Q2VWA4 1001 aaPredicted RBP19.67■□□□□ 0.74
COL4A1-204ENST00000543140 DNAJC2Q99543 621 aaKnown RBP19.67■□□□□ 0.74
COL4A1-204ENST00000543140 ATP5JP18859 108 aa19.67■□□□□ 0.74
COL4A1-204ENST00000543140 AK2P54819 239 aa19.67■□□□□ 0.74
COL4A1-204ENST00000543140 TTC14Q96N46 770 aa19.67■□□□□ 0.74
COL4A1-204ENST00000543140 NEUROD6Q96NK8 337 aa19.67■□□□□ 0.74
COL4A1-204ENST00000543140 RBM8AQ9Y5S9 174 aaKnown RBP19.67■□□□□ 0.74
COL4A1-204ENST00000543140 ATG9AQ7Z3C6 839 aa19.66■□□□□ 0.74
COL4A1-204ENST00000543140 JAKMIP1Q96N16 626 aaKnown RBP19.66■□□□□ 0.74
COL4A1-204ENST00000543140 COL14A1Q05707 1796 aaKnown RBP19.66■□□□□ 0.74
COL4A1-204ENST00000543140 PTMSP20962 102 aa19.66■□□□□ 0.74
COL4A1-204ENST00000543140 TCIRG1Q13488 830 aa19.66■□□□□ 0.74
COL4A1-204ENST00000543140 ADAMTS2O95450 1211 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 STARD3NLO95772 234 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 CHGBP05060 677 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 NECTIN1Q15223 517 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 LRRC24Q50LG9 513 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 L1TD1Q5T7N2 865 aaKnown RBP19.65■□□□□ 0.74
COL4A1-204ENST00000543140 INTS4Q96HW7 963 aaKnown RBP19.65■□□□□ 0.74
COL4A1-204ENST00000543140 CCDC85AQ96PX6 553 aaPredicted RBP19.65■□□□□ 0.74
COL4A1-204ENST00000543140 DDX49Q9Y6V7 483 aaKnown RBP19.65■□□□□ 0.74
COL4A1-204ENST00000543140 FSD2A1L4K1 749 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 EXOC5O00471 708 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 TIMM10P62072 90 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 KIF6Q6ZMV9 814 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 RUFY3Q7L099 469 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 ISCA1Q9BUE6 129 aa19.65■□□□□ 0.74
COL4A1-204ENST00000543140 TEX13AQ9BXU3 409 aaPredicted RBP19.65■□□□□ 0.74
COL4A1-204ENST00000543140 ZNF589Q86UQ0 364 aaPredicted RBP19.64■□□□□ 0.74
COL4A1-204ENST00000543140 FAM89AQ96GI7 184 aa19.64■□□□□ 0.74
COL4A1-204ENST00000543140 DISP2A7MBM2 1401 aa19.64■□□□□ 0.73
COL4A1-204ENST00000543140 VSIG10Q8N0Z9 540 aa19.64■□□□□ 0.73
COL4A1-204ENST00000543140 MAP4K1Q92918 833 aa19.64■□□□□ 0.73
COL4A1-204ENST00000543140 SLC4A9Q96Q91 983 aa19.64■□□□□ 0.73
COL4A1-204ENST00000543140 A0A0G2JS52 829 aa19.63■□□□□ 0.73
COL4A1-204ENST00000543140 CREB3L3Q68CJ9 461 aa19.63■□□□□ 0.73
COL4A1-204ENST00000543140 DDX46Q7L014 1031 aaKnown RBP19.63■□□□□ 0.73
COL4A1-204ENST00000543140 PUS3Q9BZE2 481 aaKnown RBP19.63■□□□□ 0.73
COL4A1-204ENST00000543140 XRCC6P12956 609 aaKnown RBP eCLIP19.63■□□□□ 0.73
COL4A1-204ENST00000543140 LIMCH1Q9UPQ0 1083 aa19.63■□□□□ 0.73
COL4A1-204ENST00000543140 COL16A1Q07092 1604 aaPredicted RBP19.62■□□□□ 0.73
COL4A1-204ENST00000543140 PRPF40AO75400 957 aaKnown RBP19.62■□□□□ 0.73
COL4A1-204ENST00000543140 ZKSCAN1P17029 563 aaPredicted RBP19.62■□□□□ 0.73
COL4A1-204ENST00000543140 DTNBO60941 627 aa19.62■□□□□ 0.73
COL4A1-204ENST00000543140 NCLP19338 710 aaKnown RBP19.62■□□□□ 0.73
COL4A1-204ENST00000543140 GPTP24298 496 aa19.62■□□□□ 0.73
COL4A1-204ENST00000543140 SYNE4Q8N205 404 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms