RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 LRP10Q7Z4F1 713 aa17.1■□□□□ 0.33
RTN3-212ENST00000543123 PSMD1Q99460 953 aa17.1■□□□□ 0.33
RTN3-212ENST00000543123 UTP14AQ9BVJ6 771 aaKnown RBP17.1■□□□□ 0.33
RTN3-212ENST00000543123 DDX21Q9NR30 783 aaKnown RBP eCLIP17.1■□□□□ 0.33
RTN3-212ENST00000543123 ZNF277Q9NRM2 450 aaPredicted RBP17.1■□□□□ 0.33
RTN3-212ENST00000543123 TRIM35Q9UPQ4 493 aa17.1■□□□□ 0.33
RTN3-212ENST00000543123 DDNO94850 711 aaPredicted RBP17.09■□□□□ 0.33
RTN3-212ENST00000543123 IARSP41252 1262 aaKnown RBP17.09■□□□□ 0.33
RTN3-212ENST00000543123 KLRG1Q96E93 195 aa17.09■□□□□ 0.33
RTN3-212ENST00000543123 L3MBTL3Q96JM7 780 aaPredicted RBP17.09■□□□□ 0.33
RTN3-212ENST00000543123 NLRP3Q96P20 1036 aa17.09■□□□□ 0.33
RTN3-212ENST00000543123 CRAMP1Q96RY5 1269 aa17.09■□□□□ 0.33
RTN3-212ENST00000543123 ANKRD36CQ5JPF3 1778 aa17.08■□□□□ 0.33
RTN3-212ENST00000543123 POTECB2RU33 542 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 PROSER3Q2NL68 480 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 HDGFL1Q5TGJ6 251 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 COPS6Q7L5N1 327 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 XAGE3Q8WTP9 111 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 JDP2Q8WYK2 163 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 NECTIN2Q92692 538 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 CFAP44Q96MT7 982 aa17.08■□□□□ 0.32
RTN3-212ENST00000543123 SCN4AP35499 1836 aa17.07■□□□□ 0.32
RTN3-212ENST00000543123 PPEF1O14829 653 aaPredicted RBP17.07■□□□□ 0.32
RTN3-212ENST00000543123 ANXA1P04083 346 aa17.07■□□□□ 0.32
RTN3-212ENST00000543123 AIMP1Q12904 312 aaKnown RBP17.07■□□□□ 0.32
RTN3-212ENST00000543123 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
RTN3-212ENST00000543123 SYNE4Q8N205 404 aa17.07■□□□□ 0.32
RTN3-212ENST00000543123 CHADLQ6NUI6 762 aa17.06■□□□□ 0.32
RTN3-212ENST00000543123 DBF4Q9UBU7 674 aaPredicted RBP17.06■□□□□ 0.32
RTN3-212ENST00000543123 SNED1Q8TER0 1413 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 HTRA3P83110 453 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 TCIRG1Q13488 830 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 SLC10A5Q5PT55 438 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 NLRP10Q86W26 655 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 CHPF2Q9P2E5 772 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 PCNTO95613 3336 aa17.05■□□□□ 0.32
RTN3-212ENST00000543123 SH3TC1Q8TE82 1336 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 ZNF541Q9H0D2 1346 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 FZD9O00144 591 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 LDHDQ86WU2 507 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 GPC2Q8N158 579 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 JMYQ8N9B5 988 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 CHMP4AQ9BY43 222 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 HYPKQ9NX55 129 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 TRMT112Q9UI30 125 aaKnown RBP17.04■□□□□ 0.32
RTN3-212ENST00000543123 HACL1Q9UJ83 578 aa17.04■□□□□ 0.32
RTN3-212ENST00000543123 EIF6P56537 245 aaKnown RBP17.03■□□□□ 0.32
RTN3-212ENST00000543123 GNAI1P63096 354 aa17.03■□□□□ 0.32
RTN3-212ENST00000543123 KRT24Q2M2I5 525 aa17.03■□□□□ 0.32
RTN3-212ENST00000543123 PLBD2Q8NHP8 589 aa17.03■□□□□ 0.32
RTN3-212ENST00000543123 TAF1DQ9H5J8 278 aaPredicted RBP17.03■□□□□ 0.32
RTN3-212ENST00000543123 IFT57Q9NWB7 429 aa17.03■□□□□ 0.32
RTN3-212ENST00000543123 APAF1O14727 1248 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 C3orf67Q6ZVT6 689 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 PNMA8AQ86V59 439 aaPredicted RBP17.02■□□□□ 0.32
RTN3-212ENST00000543123 LARGE2Q8N3Y3 721 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 SUPT20HQ8NEM7 779 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 VPS33BQ9H267 617 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 MBIPQ9NS73 344 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 ATP6V0A2Q9Y487 856 aa17.02■□□□□ 0.32
RTN3-212ENST00000543123 ABCC4O15439 1325 aa17.01■□□□□ 0.31
RTN3-212ENST00000543123 BBOX1O75936 387 aa17.01■□□□□ 0.31
RTN3-212ENST00000543123 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
RTN3-212ENST00000543123 IFFO2Q5TF58 517 aa17.01■□□□□ 0.31
RTN3-212ENST00000543123 DUSP27Q5VZP5 1158 aa17.01■□□□□ 0.31
RTN3-212ENST00000543123 ANKRD13DQ6ZTN6 518 aa17.01■□□□□ 0.31
RTN3-212ENST00000543123 DDX46Q7L014 1031 aaKnown RBP17.01■□□□□ 0.31
RTN3-212ENST00000543123 TCERG1O14776 1098 aaKnown RBP17■□□□□ 0.31
RTN3-212ENST00000543123 LMOD1P29536 600 aaPredicted RBP17■□□□□ 0.31
RTN3-212ENST00000543123 EPHX2P34913 555 aa17■□□□□ 0.31
RTN3-212ENST00000543123 EAPPQ56P03 285 aaPredicted RBP17■□□□□ 0.31
RTN3-212ENST00000543123 TMC4Q7Z404 712 aa17■□□□□ 0.31
RTN3-212ENST00000543123 NIM1KQ8IY84 436 aa17■□□□□ 0.31
RTN3-212ENST00000543123 PIAS4Q8N2W9 510 aaPredicted RBP17■□□□□ 0.31
RTN3-212ENST00000543123 CREBZFQ9NS37 354 aa17■□□□□ 0.31
RTN3-212ENST00000543123 ZNF853P0CG23 659 aa16.99■□□□□ 0.31
RTN3-212ENST00000543123 HCLS1P14317 486 aaPredicted RBP16.99■□□□□ 0.31
RTN3-212ENST00000543123 GOLGA2Q08379 1002 aa16.99■□□□□ 0.31
RTN3-212ENST00000543123 LAMB2P55268 1798 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 PPIP5K2O43314 1243 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 POTEIP0CG38 1075 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 POTEJP0CG39 1038 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 HSP90B1P14625 803 aaKnown RBP16.98■□□□□ 0.31
RTN3-212ENST00000543123 GRAPQ13588 217 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 DPP8Q6V1X1 898 aaPredicted RBP16.98■□□□□ 0.31
RTN3-212ENST00000543123 SP8Q8IXZ3 490 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 GRAPLQ8TC17 118 aaPredicted RBP16.98■□□□□ 0.31
RTN3-212ENST00000543123 CLEC11AQ9Y240 323 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 GJA3Q9Y6H8 435 aa16.98■□□□□ 0.31
RTN3-212ENST00000543123 ISCA1Q9BUE6 129 aa16.97■□□□□ 0.31
RTN3-212ENST00000543123 TRIM28Q13263 835 aaKnown RBP16.96■□□□□ 0.31
RTN3-212ENST00000543123 RIC3Q7Z5B4 369 aa16.96■□□□□ 0.31
RTN3-212ENST00000543123 RTFDC1Q9BY42 306 aaPredicted RBP16.96■□□□□ 0.31
RTN3-212ENST00000543123 COL4A5P29400 1685 aa16.95■□□□□ 0.3
RTN3-212ENST00000543123 AOC3Q16853 763 aa16.95■□□□□ 0.3
RTN3-212ENST00000543123 MPNDQ8N594 471 aa16.95■□□□□ 0.3
RTN3-212ENST00000543123 PASKQ96RG2 1323 aa16.95■□□□□ 0.3
RTN3-212ENST00000543123 ADAMTSL1Q8N6G6 1762 aa16.94■□□□□ 0.3
RTN3-212ENST00000543123 ATP5J2-PTCD1G3V325 749 aa16.94■□□□□ 0.3
RTN3-212ENST00000543123 DDX58O95786 925 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms