RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 ZBTB1Q9Y2K1 713 aa12.8□□□□□ -0.36
CHFR-219ENST00000541341 SOS1Q07889 1333 aaPredicted RBP12.8□□□□□ -0.36
CHFR-219ENST00000541341 COL15A1P39059 1388 aa12.8□□□□□ -0.36
CHFR-219ENST00000541341 TM4SF1P30408 202 aa12.79□□□□□ -0.36
CHFR-219ENST00000541341 APLP1P51693 650 aa12.79□□□□□ -0.36
CHFR-219ENST00000541341 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.79□□□□□ -0.36
CHFR-219ENST00000541341 ZNF219Q9P2Y4 722 aaPredicted RBP12.79□□□□□ -0.36
CHFR-219ENST00000541341 ZNF330Q9Y3S2 320 aaPredicted RBP12.79□□□□□ -0.36
CHFR-219ENST00000541341 SCN7AQ01118 1682 aa12.79□□□□□ -0.36
CHFR-219ENST00000541341 CARMIL3Q8ND23 1372 aa12.79□□□□□ -0.36
CHFR-219ENST00000541341 MRC1P22897 1456 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 CYP19A1P11511 503 aaPredicted RBP12.78□□□□□ -0.36
CHFR-219ENST00000541341 MCM5P33992 734 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 NUCB2P80303 420 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 NFIXQ14938 502 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 BMP2KLQ5H9B9 411 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 GAS2L2Q8NHY3 880 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 PDCL3Q9H2J4 239 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 KDM3BQ7LBC6 1761 aa12.78□□□□□ -0.36
CHFR-219ENST00000541341 FER1L6Q2WGJ9 1857 aa12.77□□□□□ -0.37
CHFR-219ENST00000541341 NFE2L2Q16236 605 aa12.77□□□□□ -0.37
CHFR-219ENST00000541341 CSPP1Q1MSJ5 1256 aa12.77□□□□□ -0.37
CHFR-219ENST00000541341 ATF7IPQ6VMQ6 1270 aa12.77□□□□□ -0.37
CHFR-219ENST00000541341 DNAJC5GQ8N7S2 189 aa12.77□□□□□ -0.37
CHFR-219ENST00000541341 ARHGAP45Q92619 1136 aa12.77□□□□□ -0.37
CHFR-219ENST00000541341 CWC22Q9HCG8 908 aaKnown RBP12.77□□□□□ -0.37
CHFR-219ENST00000541341 BCORQ6W2J9 1755 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 SLX4Q8IY92 1834 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 HTATSF1O43719 755 aaKnown RBP12.76□□□□□ -0.37
CHFR-219ENST00000541341 SERPINB2P05120 415 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 TMPOP42166 694 aaKnown RBP12.76□□□□□ -0.37
CHFR-219ENST00000541341 PRELPP51888 382 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 BCL2L12Q9HB09 334 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 SPINK5Q9NQ38 1064 aaPredicted RBP12.76□□□□□ -0.37
CHFR-219ENST00000541341 RRAGDQ9NQL2 400 aaPredicted RBP12.76□□□□□ -0.37
CHFR-219ENST00000541341 NARFQ9UHQ1 456 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 PCDHB15Q9Y5E8 787 aa12.76□□□□□ -0.37
CHFR-219ENST00000541341 PCNTO95613 3336 aa12.75□□□□□ -0.37
CHFR-219ENST00000541341 SEC24BO95487 1268 aa12.75□□□□□ -0.37
CHFR-219ENST00000541341 MSNP26038 577 aaKnown RBP12.75□□□□□ -0.37
CHFR-219ENST00000541341 RAB3GAP1Q15042 981 aa12.75□□□□□ -0.37
CHFR-219ENST00000541341 C2CD5Q86YS7 1000 aa12.75□□□□□ -0.37
CHFR-219ENST00000541341 CEMIPQ8WUJ3 1361 aa12.75□□□□□ -0.37
CHFR-219ENST00000541341 DDIT3P35638 169 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 NUCB1Q02818 461 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 CASC1Q6TDU7 716 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 SKAP1Q86WV1 359 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 RBM46Q8TBY0 533 aaKnown RBP12.74□□□□□ -0.37
CHFR-219ENST00000541341 PPP1R9BQ96SB3 815 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 SMC4Q9NTJ3 1288 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 ARFGEF2Q9Y6D5 1785 aa12.74□□□□□ -0.37
CHFR-219ENST00000541341 GNAT3A8MTJ3 354 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 CAPN15O75808 1086 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 PIP4K2AP48426 406 aaPredicted RBP12.73□□□□□ -0.37
CHFR-219ENST00000541341 MFAP1P55081 439 aaKnown RBP12.73□□□□□ -0.37
CHFR-219ENST00000541341 KLHL40Q2TBA0 621 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 TBC1D9BQ66K14 1250 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 ZSCAN30Q86W11 494 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 TTC5Q8N0Z6 440 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 ZNF622Q969S3 477 aaKnown RBP eCLIP12.73□□□□□ -0.37
CHFR-219ENST00000541341 TBC1D2BQ9UPU7 963 aa12.73□□□□□ -0.37
CHFR-219ENST00000541341 RIPK4P57078 832 aa12.72□□□□□ -0.37
CHFR-219ENST00000541341 LMOD3Q0VAK6 560 aa12.72□□□□□ -0.37
CHFR-219ENST00000541341 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
CHFR-219ENST00000541341 K7ELQ4 463 aaPredicted RBP12.71□□□□□ -0.37
CHFR-219ENST00000541341 KCNQ3O43525 872 aa12.71□□□□□ -0.37
CHFR-219ENST00000541341 RABEP1Q15276 862 aa12.71□□□□□ -0.37
CHFR-219ENST00000541341 TTLL6Q8N841 843 aa12.71□□□□□ -0.37
CHFR-219ENST00000541341 ZNF496Q96IT1 587 aaPredicted RBP12.71□□□□□ -0.37
CHFR-219ENST00000541341 H0YIN7 160 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 C21orf2O43822 256 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 A1BGP04217 495 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 LMNB1P20700 586 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 TEFQ10587 303 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 CHD1LQ86WJ1 897 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 ITPRIPQ8IWB1 547 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 KLRG1Q96E93 195 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 ZBTB40Q9NUA8 1239 aa12.7□□□□□ -0.38
CHFR-219ENST00000541341 PRAMEF22A3QJZ6 481 aa12.69□□□□□ -0.38
CHFR-219ENST00000541341 NFKBIEO00221 500 aa12.69□□□□□ -0.38
CHFR-219ENST00000541341 NPHP1O15259 732 aa12.69□□□□□ -0.38
CHFR-219ENST00000541341 EIF5P55010 431 aaKnown RBP12.69□□□□□ -0.38
CHFR-219ENST00000541341 COL13A1Q5TAT6 717 aaPredicted RBP12.69□□□□□ -0.38
CHFR-219ENST00000541341 RRP7AQ9Y3A4 280 aaKnown RBP12.69□□□□□ -0.38
CHFR-219ENST00000541341 LAMB4A4D0S4 1761 aa12.69□□□□□ -0.38
CHFR-219ENST00000541341 HEG1Q9ULI3 1381 aa12.69□□□□□ -0.38
CHFR-219ENST00000541341 NUP98P52948 1817 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 OFD1O75665 1012 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 STARD3NLO95772 234 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 NASPP49321 788 aaPredicted RBP12.68□□□□□ -0.38
CHFR-219ENST00000541341 MCM2P49736 904 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 ZNF445P59923 1031 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 FSTL1Q12841 308 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 VSIG10Q8N0Z9 540 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 SMC1BQ8NDV3 1235 aa12.68□□□□□ -0.38
CHFR-219ENST00000541341 RTF1Q92541 710 aaKnown RBP12.68□□□□□ -0.38
CHFR-219ENST00000541341 TNPO1Q92973 898 aaKnown RBP12.68□□□□□ -0.38
CHFR-219ENST00000541341 GLTPD2A6NH11 291 aa12.67□□□□□ -0.38
CHFR-219ENST00000541341 FAM177BA6PVY3 158 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms