RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 ABCC12Q96J65 1359 aa35.56■■■■□ 3.28
CHFR-218ENST00000540963 WBP1LQ9NX94 342 aa35.56■■■■□ 3.28
CHFR-218ENST00000540963 MIS18AQ9NYP9 233 aa35.55■■■■□ 3.28
CHFR-218ENST00000540963 EIF6P56537 245 aaKnown RBP35.54■■■■□ 3.28
CHFR-218ENST00000540963 KIF6Q6ZMV9 814 aa35.54■■■■□ 3.28
CHFR-218ENST00000540963 RPGRQ92834 1020 aaKnown RBP35.54■■■■□ 3.28
CHFR-218ENST00000540963 DEFB115Q30KQ5 88 aa35.53■■■■□ 3.28
CHFR-218ENST00000540963 NUTM1Q86Y26 1132 aa35.53■■■■□ 3.28
CHFR-218ENST00000540963 MAP1SQ66K74 1059 aaPredicted RBP35.52■■■■□ 3.28
CHFR-218ENST00000540963 EIF4A1P60842 406 aaKnown RBP35.51■■■■□ 3.28
CHFR-218ENST00000540963 CRAMP1Q96RY5 1269 aa35.51■■■■□ 3.28
CHFR-218ENST00000540963 NGEFQ8N5V2 710 aa35.5■■■■□ 3.27
CHFR-218ENST00000540963 LMOD1P29536 600 aaPredicted RBP35.49■■■■□ 3.27
CHFR-218ENST00000540963 ERBB4Q15303 1308 aa35.49■■■■□ 3.27
CHFR-218ENST00000540963 MAP2K1Q02750 393 aaPredicted RBP35.48■■■■□ 3.27
CHFR-218ENST00000540963 TTLL7Q6ZT98 887 aa35.48■■■■□ 3.27
CHFR-218ENST00000540963 RRP7AQ9Y3A4 280 aaKnown RBP35.48■■■■□ 3.27
CHFR-218ENST00000540963 COL4A5P29400 1685 aa35.48■■■■□ 3.27
CHFR-218ENST00000540963 UBN2Q6ZU65 1347 aa35.48■■■■□ 3.27
CHFR-218ENST00000540963 RBM17Q96I25 401 aaKnown RBP35.47■■■■□ 3.27
CHFR-218ENST00000540963 ZNF34Q8IZ26 560 aa35.46■■■■□ 3.27
CHFR-218ENST00000540963 DDX21Q9NR30 783 aaKnown RBP eCLIP35.46■■■■□ 3.27
CHFR-218ENST00000540963 GJA3Q9Y6H8 435 aa35.46■■■■□ 3.27
CHFR-218ENST00000540963 LTBP1Q14766 1721 aa35.46■■■■□ 3.27
CHFR-218ENST00000540963 SUSD4Q5VX71 490 aa35.45■■■■□ 3.27
CHFR-218ENST00000540963 LARGE2Q8N3Y3 721 aa35.45■■■■□ 3.27
CHFR-218ENST00000540963 VPS33BQ9H267 617 aa35.45■■■■□ 3.27
CHFR-218ENST00000540963 WDR33Q9C0J8 1336 aaKnown RBP35.45■■■■□ 3.27
CHFR-218ENST00000540963 GIGYF2Q6Y7W6 1299 aaKnown RBP35.44■■■■□ 3.26
CHFR-218ENST00000540963 PLEKHF1Q96S99 279 aa35.44■■■■□ 3.26
CHFR-218ENST00000540963 MYL6BP14649 208 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 GPTP24298 496 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 SCNN1DP51172 638 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 LBX1P52954 281 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 USP50Q70EL3 339 aaPredicted RBP35.43■■■■□ 3.26
CHFR-218ENST00000540963 PPP1R42Q7Z4L9 355 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 ZBTB3Q9H5J0 574 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 ABT1Q9ULW3 272 aaKnown RBP35.43■■■■□ 3.26
CHFR-218ENST00000540963 TRPM7Q96QT4 1865 aa35.43■■■■□ 3.26
CHFR-218ENST00000540963 PPEF1O14829 653 aaPredicted RBP35.42■■■■□ 3.26
CHFR-218ENST00000540963 NTSR2O95665 410 aa35.42■■■■□ 3.26
CHFR-218ENST00000540963 NFE2L2Q16236 605 aa35.42■■■■□ 3.26
CHFR-218ENST00000540963 PARP10Q53GL7 1025 aa35.42■■■■□ 3.26
CHFR-218ENST00000540963 PNNQ9H307 717 aaKnown RBP35.42■■■■□ 3.26
CHFR-218ENST00000540963 THSD7BQ9C0I4 1608 aa35.41■■■■□ 3.26
CHFR-218ENST00000540963 TMX4Q9H1E5 349 aaPredicted RBP35.4■■■■□ 3.26
CHFR-218ENST00000540963 HSPA8P11142 646 aaKnown RBP35.39■■■■□ 3.26
CHFR-218ENST00000540963 NIM1KQ8IY84 436 aa35.39■■■■□ 3.26
CHFR-218ENST00000540963 NLRP3Q96P20 1036 aa35.39■■■■□ 3.26
CHFR-218ENST00000540963 EPS15P42566 896 aa35.38■■■■□ 3.25
CHFR-218ENST00000540963 ECE1P42892 770 aa35.38■■■■□ 3.25
CHFR-218ENST00000540963 SLC10A5Q5PT55 438 aa35.36■■■■□ 3.25
CHFR-218ENST00000540963 ATP6V0A2Q9Y487 856 aa35.36■■■■□ 3.25
CHFR-218ENST00000540963 PPIP5K2O43314 1243 aa35.34■■■■□ 3.25
CHFR-218ENST00000540963 SUPT20HQ8NEM7 779 aa35.34■■■■□ 3.25
CHFR-218ENST00000540963 THUMPD2Q9BTF0 503 aaKnown RBP35.34■■■■□ 3.25
CHFR-218ENST00000540963 LRP10Q7Z4F1 713 aa35.33■■■■□ 3.25
CHFR-218ENST00000540963 MAPK8IP3Q9UPT6 1336 aa35.32■■■■□ 3.25
CHFR-218ENST00000540963 C3orf67Q6ZVT6 689 aa35.32■■■■□ 3.24
CHFR-218ENST00000540963 CAPNS2Q96L46 248 aa35.32■■■■□ 3.24
CHFR-218ENST00000540963 UTP14AQ9BVJ6 771 aaKnown RBP35.32■■■■□ 3.24
CHFR-218ENST00000540963 RTFDC1Q9BY42 306 aaPredicted RBP35.32■■■■□ 3.24
CHFR-218ENST00000540963 ADARB2Q9NS39 739 aaKnown RBP35.32■■■■□ 3.24
CHFR-218ENST00000540963 GPRC5DQ9NZD1 345 aa35.32■■■■□ 3.24
CHFR-218ENST00000540963 BABAM1Q9NWV8 329 aa35.31■■■■□ 3.24
CHFR-218ENST00000540963 ANKRD36CQ5JPF3 1778 aa35.3■■■■□ 3.24
CHFR-218ENST00000540963 CST9Q5W186 159 aa35.3■■■■□ 3.24
CHFR-218ENST00000540963 ZNRF3Q9ULT6 936 aa35.3■■■■□ 3.24
CHFR-218ENST00000540963 TCERG1O14776 1098 aaKnown RBP35.29■■■■□ 3.24
CHFR-218ENST00000540963 PDIA6Q15084 440 aa35.29■■■■□ 3.24
CHFR-218ENST00000540963 AOC3Q16853 763 aa35.29■■■■□ 3.24
CHFR-218ENST00000540963 BEGAINQ9BUH8 593 aa35.29■■■■□ 3.24
CHFR-218ENST00000540963 TSPYL4Q9UJ04 414 aa35.29■■■■□ 3.24
CHFR-218ENST00000540963 TLL2Q9Y6L7 1015 aa35.29■■■■□ 3.24
CHFR-218ENST00000540963 BBOX1O75936 387 aa35.28■■■■□ 3.24
CHFR-218ENST00000540963 CDHR2Q9BYE9 1310 aa35.28■■■■□ 3.24
CHFR-218ENST00000540963 ABHD8Q96I13 439 aa35.27■■■■□ 3.24
CHFR-218ENST00000540963 GPR101Q96P66 508 aaPredicted RBP35.27■■■■□ 3.24
CHFR-218ENST00000540963 ABCC4O15439 1325 aa35.27■■■■□ 3.24
CHFR-218ENST00000540963 LAMB2P55268 1798 aa35.26■■■■□ 3.24
CHFR-218ENST00000540963 FMR1Q06787 632 aaKnown RBP eCLIP35.26■■■■□ 3.24
CHFR-218ENST00000540963 CXCL9Q07325 125 aa35.26■■■■□ 3.24
CHFR-218ENST00000540963 HSP90AB3PQ58FF7 597 aa35.26■■■■□ 3.24
CHFR-218ENST00000540963 SLC51AQ86UW1 340 aa35.26■■■■□ 3.24
CHFR-218ENST00000540963 SP8Q8IXZ3 490 aa35.26■■■■□ 3.24
CHFR-218ENST00000540963 MAP2K2P36507 400 aa35.25■■■■□ 3.23
CHFR-218ENST00000540963 TRAF5O00463 557 aa35.24■■■■□ 3.23
CHFR-218ENST00000540963 CYP4F22Q6NT55 531 aa35.24■■■■□ 3.23
CHFR-218ENST00000540963 PAXIP1Q6ZW49 1069 aaPredicted RBP35.24■■■■□ 3.23
CHFR-218ENST00000540963 PGAP2Q9UHJ9 254 aa35.24■■■■□ 3.23
CHFR-218ENST00000540963 HHIPL1Q96JK4 782 aa35.23■■■■□ 3.23
CHFR-218ENST00000540963 EIF2S2P20042 333 aaKnown RBP35.22■■■■□ 3.23
CHFR-218ENST00000540963 DPP8Q6V1X1 898 aaPredicted RBP35.22■■■■□ 3.23
CHFR-218ENST00000540963 ZC3H15Q8WU90 426 aaKnown RBP35.22■■■■□ 3.23
CHFR-218ENST00000540963 KIAA2012Q0VF49 1180 aa35.21■■■■□ 3.23
CHFR-218ENST00000540963 MPNDQ8N594 471 aa35.21■■■■□ 3.23
CHFR-218ENST00000540963 TNIP1Q15025 636 aa35.2■■■■□ 3.23
CHFR-218ENST00000540963 CIAPIN1Q6FI81 312 aa35.2■■■■□ 3.23
CHFR-218ENST00000540963 GMPSP49915 693 aaPredicted RBP35.19■■■■□ 3.22
CHFR-218ENST00000540963 TMC4Q7Z404 712 aa35.19■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms