RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ZFYP08048 801 aaPredicted RBP16.45■□□□□ 0.22
USP3-204ENST00000540797 SBNO1A3KN83 1393 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 IBSPP21815 317 aaPredicted RBP16.45■□□□□ 0.22
USP3-204ENST00000540797 RUFY1Q96T51 708 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 DEF6Q9H4E7 631 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 PHAXQ9H814 394 aaKnown RBP16.45■□□□□ 0.22
USP3-204ENST00000540797 NCOA7Q8NI08 942 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 TBC1D9Q6ZT07 1266 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 SPC24Q8NBT2 197 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 DDX17Q92841 729 aaKnown RBP16.45■□□□□ 0.22
USP3-204ENST00000540797 RSPH6AQ9H0K4 717 aa16.45■□□□□ 0.22
USP3-204ENST00000540797 KRT24Q2M2I5 525 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 ANKRD44Q8N8A2 993 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 RAB34Q9BZG1 259 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 ARHGEF10O15013 1369 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 CCP110O43303 1012 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 CWF19L2Q2TBE0 894 aaKnown RBP16.44■□□□□ 0.22
USP3-204ENST00000540797 TSPYL6Q8N831 410 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 ZC3H12CQ9C0D7 883 aaKnown RBP16.44■□□□□ 0.22
USP3-204ENST00000540797 VAT1LQ9HCJ6 419 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 LUC7LQ9NQ29 371 aaKnown RBP16.44■□□□□ 0.22
USP3-204ENST00000540797 CCNL1Q9UK58 526 aaPredicted RBP16.44■□□□□ 0.22
USP3-204ENST00000540797 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.44■□□□□ 0.22
USP3-204ENST00000540797 SCLT1Q96NL6 688 aa16.44■□□□□ 0.22
USP3-204ENST00000540797 CBFA2T2O43439 604 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 DHX8Q14562 1220 aaKnown RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 FAM43AQ8N2R8 423 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 WWC3Q9ULE0 1092 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 NSFL1CQ9UNZ2 370 aaKnown RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 USP16Q9Y5T5 823 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 IGHDP01880 384 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 HDAC1Q13547 482 aaPredicted RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 TMEM266Q2M3C6 531 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 NAA16Q6N069 864 aaPredicted RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 CCDC12Q8WUD4 166 aaPredicted RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 NEK1Q96PY6 1258 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 VAMP4O75379 141 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 CCDC144CPQ8IYA2 1237 aa16.43■□□□□ 0.22
USP3-204ENST00000540797 COL17A1Q9UMD9 1497 aaPredicted RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 FAM98CQ17RN3 349 aaKnown RBP16.43■□□□□ 0.22
USP3-204ENST00000540797 LTKP29376 864 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 IARSP41252 1262 aaKnown RBP16.42■□□□□ 0.22
USP3-204ENST00000540797 LARP6Q9BRS8 491 aaKnown RBP16.42■□□□□ 0.22
USP3-204ENST00000540797 ARGLU1Q9NWB6 273 aaPredicted RBP16.42■□□□□ 0.22
USP3-204ENST00000540797 PIK3C2GO75747 1445 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 PPP4R3AQ6IN85 833 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 PA2G4Q9UQ80 394 aaKnown RBP16.42■□□□□ 0.22
USP3-204ENST00000540797 SLC4A4Q9Y6R1 1079 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 MICU3Q86XE3 530 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 NUCB1Q02818 461 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 SCAND2PQ9GZW5 306 aaPredicted RBP16.42■□□□□ 0.22
USP3-204ENST00000540797 STK32BQ9NY57 414 aa16.42■□□□□ 0.22
USP3-204ENST00000540797 STX8Q9UNK0 236 aa16.41■□□□□ 0.22
USP3-204ENST00000540797 YEATS2Q9ULM3 1422 aa16.41■□□□□ 0.22
USP3-204ENST00000540797 NOM1Q5C9Z4 860 aaKnown RBP16.41■□□□□ 0.22
USP3-204ENST00000540797 ZNF790Q6PG37 636 aa16.41■□□□□ 0.22
USP3-204ENST00000540797 DDX21Q9NR30 783 aaKnown RBP eCLIP16.41■□□□□ 0.22
USP3-204ENST00000540797 SLC9C2Q5TAH2 1124 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 HELBQ8NG08 1087 aaPredicted RBP16.4■□□□□ 0.22
USP3-204ENST00000540797 JDP2Q8WYK2 163 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 MYCNP04198 464 aaPredicted RBP16.4■□□□□ 0.22
USP3-204ENST00000540797 METAP2P50579 478 aaKnown RBP eCLIP16.4■□□□□ 0.22
USP3-204ENST00000540797 USP21Q9UK80 565 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 SMTNL1A8MU46 457 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 IL13P35225 146 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 CDR1P51861 262 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 TSPY3P0CV98 308 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 TSPY8P0CW00 308 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 PDE1AP54750 535 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 PICALMQ13492 652 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 MAP3K11Q16584 847 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 ANKRD2Q9GZV1 360 aa16.4■□□□□ 0.22
USP3-204ENST00000540797 SOS1Q07889 1333 aaPredicted RBP16.4■□□□□ 0.22
USP3-204ENST00000540797 PPP1R12BO60237 982 aaPredicted RBP16.39■□□□□ 0.22
USP3-204ENST00000540797 BAG4O95429 457 aaKnown RBP16.39■□□□□ 0.22
USP3-204ENST00000540797 MCM4P33991 863 aa16.39■□□□□ 0.22
USP3-204ENST00000540797 MCM5P33992 734 aa16.39■□□□□ 0.22
USP3-204ENST00000540797 SEPT11Q9NVA2 429 aaKnown RBP16.39■□□□□ 0.22
USP3-204ENST00000540797 CLEC11AQ9Y240 323 aa16.39■□□□□ 0.22
USP3-204ENST00000540797 KRT23Q9C075 422 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 MYO6Q9UM54 1294 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 SAMD9Q5K651 1589 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 EYA3Q99504 573 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 ACBD3Q9H3P7 528 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 RAB11FIP4Q86YS3 637 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 TXLNBQ8N3L3 684 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 KAT6BQ8WYB5 2073 aa16.39■□□□□ 0.21
USP3-204ENST00000540797 WTAPQ15007 396 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 CAMK4Q16566 473 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 CNBD1Q8NA66 436 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 SDSP20132 328 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 RBM17Q96I25 401 aaKnown RBP16.38■□□□□ 0.21
USP3-204ENST00000540797 ORC3Q9UBD5 711 aaPredicted RBP16.38■□□□□ 0.21
USP3-204ENST00000540797 CFAP74Q9C0B2 1584 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 RIMBP2O15034 1052 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 PRIM1P49642 420 aaKnown RBP16.38■□□□□ 0.21
USP3-204ENST00000540797 ESR2Q92731 530 aa16.38■□□□□ 0.21
USP3-204ENST00000540797 EIF5P55010 431 aaKnown RBP16.38■□□□□ 0.21
USP3-204ENST00000540797 MCMDC2Q4G0Z9 681 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms