RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 C3orf67Q6ZVT6 689 aa9.75□□□□□ -0.85
YBX3-209ENST00000540747 LRP10Q7Z4F1 713 aa9.75□□□□□ -0.85
YBX3-209ENST00000540747 NUTM1Q86Y26 1132 aa9.75□□□□□ -0.85
YBX3-209ENST00000540747 NUP98P52948 1817 aa9.75□□□□□ -0.85
YBX3-209ENST00000540747 FAM177BA6PVY3 158 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 NTSR2O95665 410 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 EIF4A1P60842 406 aaKnown RBP9.74□□□□□ -0.85
YBX3-209ENST00000540747 DEFB115Q30KQ5 88 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 ZNF34Q8IZ26 560 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 AIDAQ96BJ3 306 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 CRAMP1Q96RY5 1269 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 NYXQ9GZU5 481 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 DDX21Q9NR30 783 aaKnown RBP eCLIP9.74□□□□□ -0.85
YBX3-209ENST00000540747 MIS18AQ9NYP9 233 aa9.74□□□□□ -0.85
YBX3-209ENST00000540747 WDR33Q9C0J8 1336 aaKnown RBP9.74□□□□□ -0.85
YBX3-209ENST00000540747 EPS15P42566 896 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 FMR1Q06787 632 aaKnown RBP eCLIP9.73□□□□□ -0.85
YBX3-209ENST00000540747 CNGB1Q14028 1251 aaPredicted RBP9.73□□□□□ -0.85
YBX3-209ENST00000540747 GRIPAP1Q4V328 841 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 SUSD4Q5VX71 490 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 JDP2Q8WYK2 163 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 PLEKHF1Q96S99 279 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 CLEC11AQ9Y240 323 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 ERBB4Q15303 1308 aa9.73□□□□□ -0.85
YBX3-209ENST00000540747 DLG5Q8TDM6 1919 aa9.72□□□□□ -0.85
YBX3-209ENST00000540747 MAP2K1Q02750 393 aaPredicted RBP9.72□□□□□ -0.85
YBX3-209ENST00000540747 CST9Q5W186 159 aa9.72□□□□□ -0.85
YBX3-209ENST00000540747 PNISRQ8TF01 805 aaKnown RBP9.72□□□□□ -0.85
YBX3-209ENST00000540747 ABHD8Q96I13 439 aa9.72□□□□□ -0.85
YBX3-209ENST00000540747 RTFDC1Q9BY42 306 aaPredicted RBP9.72□□□□□ -0.85
YBX3-209ENST00000540747 PPEF1O14829 653 aaPredicted RBP9.71□□□□□ -0.86
YBX3-209ENST00000540747 GPTP24298 496 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 GTF2E1P29083 439 aaPredicted RBP9.71□□□□□ -0.86
YBX3-209ENST00000540747 EIF6P56537 245 aaKnown RBP9.71□□□□□ -0.86
YBX3-209ENST00000540747 PDIA6Q15084 440 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 SLC10A5Q5PT55 438 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 GIGYF2Q6Y7W6 1299 aaKnown RBP9.71□□□□□ -0.86
YBX3-209ENST00000540747 USP50Q70EL3 339 aaPredicted RBP9.71□□□□□ -0.86
YBX3-209ENST00000540747 LARGE2Q8N3Y3 721 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 CAPNS2Q96L46 248 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 VPS33BQ9H267 617 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 PGAP2Q9UHJ9 254 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 GJA3Q9Y6H8 435 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 TLL2Q9Y6L7 1015 aa9.71□□□□□ -0.86
YBX3-209ENST00000540747 TRAF5O00463 557 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 NFE2L2Q16236 605 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 KIF6Q6ZMV9 814 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 RPGRQ92834 1020 aaKnown RBP9.7□□□□□ -0.86
YBX3-209ENST00000540747 RBM17Q96I25 401 aaKnown RBP9.7□□□□□ -0.86
YBX3-209ENST00000540747 THUMPD2Q9BTF0 503 aaKnown RBP9.7□□□□□ -0.86
YBX3-209ENST00000540747 ZBTB3Q9H5J0 574 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 GPRC5DQ9NZD1 345 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 ABT1Q9ULW3 272 aaKnown RBP9.7□□□□□ -0.86
YBX3-209ENST00000540747 RRP7AQ9Y3A4 280 aaKnown RBP9.7□□□□□ -0.86
YBX3-209ENST00000540747 ATP6V0A2Q9Y487 856 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 DUOX1Q9NRD9 1551 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 TRPM7Q96QT4 1865 aa9.7□□□□□ -0.86
YBX3-209ENST00000540747 ABCC4O15439 1325 aa9.69□□□□□ -0.86
YBX3-209ENST00000540747 SLC34A2O95436 690 aa9.69□□□□□ -0.86
YBX3-209ENST00000540747 LMOD1P29536 600 aaPredicted RBP9.69□□□□□ -0.86
YBX3-209ENST00000540747 RGS19P49795 217 aa9.69□□□□□ -0.86
YBX3-209ENST00000540747 CXCL9Q07325 125 aa9.69□□□□□ -0.86
YBX3-209ENST00000540747 PARP10Q53GL7 1025 aa9.69□□□□□ -0.86
YBX3-209ENST00000540747 NGEFQ8N5V2 710 aa9.69□□□□□ -0.86
YBX3-209ENST00000540747 CDHR2Q9BYE9 1310 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 PPIP5K2O43314 1243 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 MYL6BP14649 208 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 ECE1P42892 770 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 AOC3Q16853 763 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 PROSER3Q2NL68 480 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 CYP4F22Q6NT55 531 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 SAPCD2Q86UD0 394 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 NIM1KQ8IY84 436 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 HHIPL1Q96JK4 782 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 GPR101Q96P66 508 aaPredicted RBP9.68□□□□□ -0.86
YBX3-209ENST00000540747 ADARB2Q9NS39 739 aaKnown RBP9.68□□□□□ -0.86
YBX3-209ENST00000540747 ZNRF3Q9ULT6 936 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 LAMB2P55268 1798 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 LRRC37AA6NMS7 1700 aa9.68□□□□□ -0.86
YBX3-209ENST00000540747 TNRC18O15417 2968 aaPredicted RBP9.67□□□□□ -0.86
YBX3-209ENST00000540747 MAP2K2P36507 400 aa9.67□□□□□ -0.86
YBX3-209ENST00000540747 GMPSP49915 693 aaPredicted RBP9.67□□□□□ -0.86
YBX3-209ENST00000540747 HIRAP54198 1017 aaPredicted RBP9.67□□□□□ -0.86
YBX3-209ENST00000540747 KIAA2012Q0VF49 1180 aa9.67□□□□□ -0.86
YBX3-209ENST00000540747 PPP1R42Q7Z4L9 355 aa9.67□□□□□ -0.86
YBX3-209ENST00000540747 ANKRD36CQ5JPF3 1778 aa9.67□□□□□ -0.86
YBX3-209ENST00000540747 AOC2O75106 756 aa9.66□□□□□ -0.86
YBX3-209ENST00000540747 FAM161AQ3B820 660 aa9.66□□□□□ -0.86
YBX3-209ENST00000540747 NLRP10Q86W26 655 aa9.66□□□□□ -0.86
YBX3-209ENST00000540747 SP8Q8IXZ3 490 aa9.66□□□□□ -0.86
YBX3-209ENST00000540747 ZC3H15Q8WU90 426 aaKnown RBP9.66□□□□□ -0.86
YBX3-209ENST00000540747 NLRP3Q96P20 1036 aa9.66□□□□□ -0.86
YBX3-209ENST00000540747 UTP14AQ9BVJ6 771 aaKnown RBP9.66□□□□□ -0.86
YBX3-209ENST00000540747 GLIS2Q9BZE0 524 aaPredicted RBP9.66□□□□□ -0.86
YBX3-209ENST00000540747 BABAM1Q9NWV8 329 aa9.66□□□□□ -0.86
YBX3-209ENST00000540747 YDJCA8MPS7 323 aa9.65□□□□□ -0.86
YBX3-209ENST00000540747 TCERG1O14776 1098 aaKnown RBP9.65□□□□□ -0.86
YBX3-209ENST00000540747 CA12O43570 354 aa9.65□□□□□ -0.86
YBX3-209ENST00000540747 BBOX1O75936 387 aa9.65□□□□□ -0.86
YBX3-209ENST00000540747 CELF2O95319 508 aaKnown RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms