RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 CACNA1FO60840 1977 aa20.18■□□□□ 0.82
RPAIN-206ENST00000539417 MRPL50Q8N5N7 158 aaKnown RBP20.18■□□□□ 0.82
RPAIN-206ENST00000539417 METTL22Q9BUU2 404 aaPredicted RBP20.18■□□□□ 0.82
RPAIN-206ENST00000539417 UTP14AQ9BVJ6 771 aaKnown RBP20.18■□□□□ 0.82
RPAIN-206ENST00000539417 IBTKQ9P2D0 1353 aaPredicted RBP20.18■□□□□ 0.82
RPAIN-206ENST00000539417 F6X3S4 739 aa20.18■□□□□ 0.82
RPAIN-206ENST00000539417 IGKV5-2P06315 115 aa20.18■□□□□ 0.82
RPAIN-206ENST00000539417 GTF2E1P29083 439 aaPredicted RBP20.18■□□□□ 0.82
RPAIN-206ENST00000539417 FKBP5Q13451 457 aaPredicted RBP20.18■□□□□ 0.82
RPAIN-206ENST00000539417 PPP1R42Q7Z4L9 355 aa20.18■□□□□ 0.82
RPAIN-206ENST00000539417 NYXQ9GZU5 481 aa20.18■□□□□ 0.82
RPAIN-206ENST00000539417 BCS1LQ9Y276 419 aa20.18■□□□□ 0.82
RPAIN-206ENST00000539417 DDX58O95786 925 aaKnown RBP20.17■□□□□ 0.82
RPAIN-206ENST00000539417 PDE6BP35913 854 aa20.17■□□□□ 0.82
RPAIN-206ENST00000539417 RTL5Q5HYW3 569 aaPredicted RBP20.17■□□□□ 0.82
RPAIN-206ENST00000539417 JARID2Q92833 1246 aaPredicted RBP20.17■□□□□ 0.82
RPAIN-206ENST00000539417 KLRG2A4D1S0 409 aaPredicted RBP20.16■□□□□ 0.82
RPAIN-206ENST00000539417 H0YIN7 160 aa20.16■□□□□ 0.82
RPAIN-206ENST00000539417 SRGNP10124 158 aa20.16■□□□□ 0.82
RPAIN-206ENST00000539417 FAM89AQ96GI7 184 aa20.16■□□□□ 0.82
RPAIN-206ENST00000539417 PIM2Q9P1W9 311 aa20.16■□□□□ 0.82
RPAIN-206ENST00000539417 TRMT112Q9UI30 125 aaKnown RBP20.16■□□□□ 0.82
RPAIN-206ENST00000539417 HCLS1P14317 486 aaPredicted RBP20.15■□□□□ 0.82
RPAIN-206ENST00000539417 TRIM28Q13263 835 aaKnown RBP20.15■□□□□ 0.82
RPAIN-206ENST00000539417 CWF19L2Q2TBE0 894 aaKnown RBP20.15■□□□□ 0.82
RPAIN-206ENST00000539417 ZNF622Q969S3 477 aaKnown RBP eCLIP20.15■□□□□ 0.82
RPAIN-206ENST00000539417 DDX60Q8IY21 1712 aaKnown RBP20.14■□□□□ 0.81
RPAIN-206ENST00000539417 CACNA1SQ13698 1873 aa20.14■□□□□ 0.81
RPAIN-206ENST00000539417 LAMB2P55268 1798 aa20.14■□□□□ 0.81
RPAIN-206ENST00000539417 SLC10A5Q5PT55 438 aa20.13■□□□□ 0.81
RPAIN-206ENST00000539417 DNAAF4Q8WXU2 420 aa20.13■□□□□ 0.81
RPAIN-206ENST00000539417 DALRD3Q5D0E6 543 aaKnown RBP20.12■□□□□ 0.81
RPAIN-206ENST00000539417 SLC51AQ86UW1 340 aa20.12■□□□□ 0.81
RPAIN-206ENST00000539417 SH3TC1Q8TE82 1336 aa20.12■□□□□ 0.81
RPAIN-206ENST00000539417 RIC1Q4ADV7 1423 aa20.12■□□□□ 0.81
RPAIN-206ENST00000539417 SLX4Q8IY92 1834 aa20.12■□□□□ 0.81
RPAIN-206ENST00000539417 ARFGEF1Q9Y6D6 1849 aa20.12■□□□□ 0.81
RPAIN-206ENST00000539417 NEURL1BA8MQ27 555 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 CRY2Q49AN0 593 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 DCAF8L1A6NGE4 600 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 RARSP54136 660 aaKnown RBP20.11■□□□□ 0.81
RPAIN-206ENST00000539417 ALDH1L2Q3SY69 923 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 CCDC191Q8NCU4 936 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 MASTLQ96GX5 879 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 SMC4Q9NTJ3 1288 aa20.11■□□□□ 0.81
RPAIN-206ENST00000539417 CWC25Q9NXE8 425 aaPredicted RBP20.11■□□□□ 0.81
RPAIN-206ENST00000539417 ZNF219Q9P2Y4 722 aaPredicted RBP20.11■□□□□ 0.81
RPAIN-206ENST00000539417 STYK1Q6J9G0 422 aa20.1■□□□□ 0.81
RPAIN-206ENST00000539417 TTLL6Q8N841 843 aa20.1■□□□□ 0.81
RPAIN-206ENST00000539417 NPR1P16066 1061 aa20.09■□□□□ 0.81
RPAIN-206ENST00000539417 BEND3Q5T5X7 828 aa20.09■□□□□ 0.81
RPAIN-206ENST00000539417 COL4A1P02462 1669 aa20.09■□□□□ 0.81
RPAIN-206ENST00000539417 CT47B1P0C2W7 299 aaPredicted RBP20.08■□□□□ 0.81
RPAIN-206ENST00000539417 PRPF40BQ6NWY9 871 aaKnown RBP20.08■□□□□ 0.81
RPAIN-206ENST00000539417 OLFM4Q6UX06 510 aa20.08■□□□□ 0.81
RPAIN-206ENST00000539417 ZBTB38Q8NAP3 1195 aaPredicted RBP20.08■□□□□ 0.81
RPAIN-206ENST00000539417 PDZRN3Q9UPQ7 1066 aa20.08■□□□□ 0.81
RPAIN-206ENST00000539417 RNF123Q5XPI4 1314 aa20.08■□□□□ 0.8
RPAIN-206ENST00000539417 TAF1P21675 1872 aa20.07■□□□□ 0.8
RPAIN-206ENST00000539417 IRS4O14654 1257 aaPredicted RBP20.07■□□□□ 0.8
RPAIN-206ENST00000539417 GRIN3BO60391 1043 aa20.07■□□□□ 0.8
RPAIN-206ENST00000539417 BCAR3O75815 825 aa20.07■□□□□ 0.8
RPAIN-206ENST00000539417 PCCAP05165 728 aaPredicted RBP20.07■□□□□ 0.8
RPAIN-206ENST00000539417 NEXNQ0ZGT2 675 aa20.07■□□□□ 0.8
RPAIN-206ENST00000539417 NLRP3Q96P20 1036 aa20.07■□□□□ 0.8
RPAIN-206ENST00000539417 C21orf2O43822 256 aa20.06■□□□□ 0.8
RPAIN-206ENST00000539417 GCKRQ14397 625 aa20.06■□□□□ 0.8
RPAIN-206ENST00000539417 SLC4A10Q6U841 1118 aa20.06■□□□□ 0.8
RPAIN-206ENST00000539417 LINS1Q8NG48 757 aa20.06■□□□□ 0.8
RPAIN-206ENST00000539417 NOB1Q9ULX3 412 aaKnown RBP20.06■□□□□ 0.8
RPAIN-206ENST00000539417 HOXA10P31260 410 aaPredicted RBP20.05■□□□□ 0.8
RPAIN-206ENST00000539417 CASP7P55210 303 aa20.05■□□□□ 0.8
RPAIN-206ENST00000539417 ARHGAP27Q6ZUM4 889 aa20.05■□□□□ 0.8
RPAIN-206ENST00000539417 CNKSR1Q969H4 720 aa20.05■□□□□ 0.8
RPAIN-206ENST00000539417 H7C1W4 665 aa20.05■□□□□ 0.8
RPAIN-206ENST00000539417 C7orf43Q8WVR3 580 aa20.05■□□□□ 0.8
RPAIN-206ENST00000539417 RPGRQ92834 1020 aaKnown RBP20.05■□□□□ 0.8
RPAIN-206ENST00000539417 YTHDC1Q96MU7 727 aaKnown RBP20.05■□□□□ 0.8
RPAIN-206ENST00000539417 TNNQ9UQP3 1299 aa20.05■□□□□ 0.8
RPAIN-206ENST00000539417 PTPRCP08575 1304 aa20.04■□□□□ 0.8
RPAIN-206ENST00000539417 PRELPP51888 382 aa20.04■□□□□ 0.8
RPAIN-206ENST00000539417 ABCC4O15439 1325 aa20.03■□□□□ 0.8
RPAIN-206ENST00000539417 BRPF1P55201 1214 aaPredicted RBP20.03■□□□□ 0.8
RPAIN-206ENST00000539417 RASSF7Q02833 373 aa20.03■□□□□ 0.8
RPAIN-206ENST00000539417 UBE3BQ7Z3V4 1068 aa20.03■□□□□ 0.8
RPAIN-206ENST00000539417 CHD4Q14839 1912 aa20.02■□□□□ 0.8
RPAIN-206ENST00000539417 CDHR2Q9BYE9 1310 aa20.02■□□□□ 0.8
RPAIN-206ENST00000539417 CCDC85AQ96PX6 553 aaPredicted RBP20.02■□□□□ 0.8
RPAIN-206ENST00000539417 NFKBIEO00221 500 aa20.01■□□□□ 0.79
RPAIN-206ENST00000539417 SF3B3Q15393 1217 aaKnown RBP20.01■□□□□ 0.79
RPAIN-206ENST00000539417 RBM17Q96I25 401 aaKnown RBP20.01■□□□□ 0.79
RPAIN-206ENST00000539417 CRAMP1Q96RY5 1269 aa20.01■□□□□ 0.79
RPAIN-206ENST00000539417 PDE8AO60658 829 aa20■□□□□ 0.79
RPAIN-206ENST00000539417 SRCIN1Q9C0H9 1055 aa20■□□□□ 0.79
RPAIN-206ENST00000539417 ALDH1B1P30837 517 aa19.99■□□□□ 0.79
RPAIN-206ENST00000539417 CELF1Q92879 486 aaKnown RBP19.99■□□□□ 0.79
RPAIN-206ENST00000539417 SEC31BQ9NQW1 1179 aa19.99■□□□□ 0.79
RPAIN-206ENST00000539417 SNED1Q8TER0 1413 aa19.99■□□□□ 0.79
RPAIN-206ENST00000539417 FER1L6Q2WGJ9 1857 aa19.99■□□□□ 0.79
RPAIN-206ENST00000539417 SBF1O95248 1867 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms