RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 GGNBP2Q9H3C7 697 aa8.84□□□□□ -0.99
PRKDC-208ENST00000536710 DMGDHQ9UI17 866 aaKnown RBP8.84□□□□□ -0.99
PRKDC-208ENST00000536710 DNMT3LQ9UJW3 386 aa8.84□□□□□ -0.99
PRKDC-208ENST00000536710 PNMA6FA0A0J9YX94 578 aa8.83□□□□□ -1
PRKDC-208ENST00000536710 NRG2O14511 850 aaPredicted RBP8.83□□□□□ -1
PRKDC-208ENST00000536710 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.83□□□□□ -1
PRKDC-208ENST00000536710 FNDC3AQ9Y2H6 1198 aaKnown RBP8.83□□□□□ -1
PRKDC-208ENST00000536710 RTCBQ9Y3I0 505 aaKnown RBP8.83□□□□□ -1
PRKDC-208ENST00000536710 PRPF40AO75400 957 aaKnown RBP8.82□□□□□ -1
PRKDC-208ENST00000536710 F11P03951 625 aa8.82□□□□□ -1
PRKDC-208ENST00000536710 EPB42P16452 691 aa8.82□□□□□ -1
PRKDC-208ENST00000536710 INPP5BP32019 993 aa8.82□□□□□ -1
PRKDC-208ENST00000536710 DUSP9Q99956 384 aaKnown RBP8.82□□□□□ -1
PRKDC-208ENST00000536710 MRS2Q9HD23 443 aa8.82□□□□□ -1
PRKDC-208ENST00000536710 WWC3Q9ULE0 1092 aa8.82□□□□□ -1
PRKDC-208ENST00000536710 DYRK1BQ9Y463 629 aa8.82□□□□□ -1
PRKDC-208ENST00000536710 UBAP1LF5GYI3 381 aa8.81□□□□□ -1
PRKDC-208ENST00000536710 NEFLP07196 543 aa8.81□□□□□ -1
PRKDC-208ENST00000536710 ORC1Q13415 861 aa8.81□□□□□ -1
PRKDC-208ENST00000536710 EFHC2Q5JST6 749 aa8.81□□□□□ -1
PRKDC-208ENST00000536710 RIPOR1Q6ZS17 1223 aa8.81□□□□□ -1
PRKDC-208ENST00000536710 SETDB2Q96T68 719 aa8.81□□□□□ -1
PRKDC-208ENST00000536710 ST8SIA5O15466 376 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 ENOX2Q16206 610 aaKnown RBP8.8□□□□□ -1
PRKDC-208ENST00000536710 TSNAXIP1Q2TAA8 658 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 ZNF438Q7Z4V0 828 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 FAM161BQ96MY7 647 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 CRISPLD1Q9H336 500 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 ATP13A2Q9NQ11 1180 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 PARP2Q9UGN5 583 aa8.8□□□□□ -1
PRKDC-208ENST00000536710 SOBPA7XYQ1 873 aa8.79□□□□□ -1
PRKDC-208ENST00000536710 TYRO3Q06418 890 aa8.79□□□□□ -1
PRKDC-208ENST00000536710 ALG1LQ6GMV1 187 aa8.79□□□□□ -1
PRKDC-208ENST00000536710 CRIPAKQ8N1N5 446 aa8.79□□□□□ -1
PRKDC-208ENST00000536710 CSRNP1Q96S65 589 aa8.79□□□□□ -1
PRKDC-208ENST00000536710 EIF1AYO14602 144 aaKnown RBP8.78□□□□□ -1
PRKDC-208ENST00000536710 PSMD2Q13200 908 aa8.78□□□□□ -1
PRKDC-208ENST00000536710 TRIP4Q15650 581 aaPredicted RBP8.78□□□□□ -1
PRKDC-208ENST00000536710 BRD7Q9NPI1 651 aa8.78□□□□□ -1
PRKDC-208ENST00000536710 CPNE3O75131 537 aaKnown RBP8.77□□□□□ -1.01
PRKDC-208ENST00000536710 XYLBO75191 536 aa8.77□□□□□ -1.01
PRKDC-208ENST00000536710 VAMP1P23763 118 aa8.77□□□□□ -1.01
PRKDC-208ENST00000536710 NLRP8Q86W28 1048 aa8.77□□□□□ -1.01
PRKDC-208ENST00000536710 AAASQ9NRG9 546 aa8.77□□□□□ -1.01
PRKDC-208ENST00000536710 RNF19AQ9NV58 838 aa8.77□□□□□ -1.01
PRKDC-208ENST00000536710 FOXD3Q9UJU5 478 aaPredicted RBP8.77□□□□□ -1.01
PRKDC-208ENST00000536710 KCNMB2Q9Y691 235 aa8.77□□□□□ -1.01
PRKDC-208ENST00000536710 SORBS3O60504 671 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 TNFRSF21O75509 655 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 TCF3P15923 654 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 ITGAEP38570 1179 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 LAPTM4AQ15012 233 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 PDE12Q6L8Q7 609 aaKnown RBP8.76□□□□□ -1.01
PRKDC-208ENST00000536710 SNX29Q8TEQ0 813 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 VTI1BQ9UEU0 232 aa8.76□□□□□ -1.01
PRKDC-208ENST00000536710 SENP3-EIF4A1A0A087X0R7 540 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 PHACTR2O75167 634 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 RECKO95980 971 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 PTSQ03393 145 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 FIGNL1Q6PIW4 674 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 ZCCHC2Q9C0B9 1178 aaKnown RBP8.75□□□□□ -1.01
PRKDC-208ENST00000536710 DNAJC25Q9H1X3 360 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 ELP3Q9H9T3 547 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 DACH1Q9UI36 760 aa8.75□□□□□ -1.01
PRKDC-208ENST00000536710 DCDC2BA2VCK2 349 aa8.74□□□□□ -1.01
PRKDC-208ENST00000536710 ATXN7O15265 892 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-208ENST00000536710 SAMD5Q5TGI4 173 aa8.74□□□□□ -1.01
PRKDC-208ENST00000536710 XKR5Q6UX68 686 aa8.74□□□□□ -1.01
PRKDC-208ENST00000536710 TMC4Q7Z404 712 aa8.74□□□□□ -1.01
PRKDC-208ENST00000536710 BACH2Q9BYV9 841 aa8.74□□□□□ -1.01
PRKDC-208ENST00000536710 TMEM63CQ9P1W3 806 aa8.74□□□□□ -1.01
PRKDC-208ENST00000536710 KHNYNO15037 678 aaKnown RBP8.73□□□□□ -1.01
PRKDC-208ENST00000536710 GRNP28799 593 aaKnown RBP8.73□□□□□ -1.01
PRKDC-208ENST00000536710 GNA15P30679 374 aa8.73□□□□□ -1.01
PRKDC-208ENST00000536710 DAB2P98082 770 aa8.73□□□□□ -1.01
PRKDC-208ENST00000536710 MRPL58Q14197 206 aaKnown RBP8.73□□□□□ -1.01
PRKDC-208ENST00000536710 FBF1Q8TES7 1133 aa8.73□□□□□ -1.01
PRKDC-208ENST00000536710 NUCKS1Q9H1E3 243 aaKnown RBP8.73□□□□□ -1.01
PRKDC-208ENST00000536710 IGSF5Q9NSI5 407 aa8.73□□□□□ -1.01
PRKDC-208ENST00000536710 KCNH4Q9UQ05 1017 aa8.73□□□□□ -1.01
PRKDC-208ENST00000536710 H7C1W4 665 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 LBRQ14739 615 aaKnown RBP8.72□□□□□ -1.01
PRKDC-208ENST00000536710 TTC39BQ5VTQ0 682 aaPredicted RBP8.72□□□□□ -1.01
PRKDC-208ENST00000536710 USPL1Q5W0Q7 1092 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 KRT25Q7Z3Z0 450 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 NLRP13Q86W25 1043 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 CFHR5Q9BXR6 569 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 NLRP2Q9NX02 1062 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 ABI2Q9NYB9 513 aaPredicted RBP8.72□□□□□ -1.01
PRKDC-208ENST00000536710 SPG7Q9UQ90 795 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 PCDHGC4Q9Y5F7 938 aa8.72□□□□□ -1.01
PRKDC-208ENST00000536710 SFSWAPQ12872 951 aaKnown RBP8.71□□□□□ -1.02
PRKDC-208ENST00000536710 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.71□□□□□ -1.02
PRKDC-208ENST00000536710 TMEM87AQ8NBN3 555 aa8.71□□□□□ -1.02
PRKDC-208ENST00000536710 CCDC74AQ96AQ1 378 aa8.71□□□□□ -1.02
PRKDC-208ENST00000536710 SENP2Q9HC62 589 aa8.71□□□□□ -1.02
PRKDC-208ENST00000536710 ZFYVE28Q9HCC9 887 aa8.71□□□□□ -1.02
PRKDC-208ENST00000536710 SLC35F4A4IF30 521 aa8.7□□□□□ -1.02
PRKDC-208ENST00000536710 SASH3O75995 380 aa8.7□□□□□ -1.02
PRKDC-208ENST00000536710 POLR3DP05423 398 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms