RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 TYRO3Q06418 890 aa5.81□□□□□ -1.48
CSMD3-210ENST00000534172 HSH2DQ96JZ2 352 aa5.81□□□□□ -1.48
CSMD3-210ENST00000534172 DMRTB1Q96MA1 342 aa5.81□□□□□ -1.48
CSMD3-210ENST00000534172 ANO2Q9NQ90 1003 aa5.81□□□□□ -1.48
CSMD3-210ENST00000534172 SCNN1AP37088 669 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 MARSP56192 900 aaKnown RBP5.8□□□□□ -1.48
CSMD3-210ENST00000534172 TNP2Q05952 138 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 ETFBKMTQ8IXQ9 262 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 RBCK1Q9BYM8 510 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 BRD7Q9NPI1 651 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 NDFIP2Q9NV92 336 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 MARK1Q9P0L2 795 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 BCS1LQ9Y276 419 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 KHNYNO15037 678 aaKnown RBP5.8□□□□□ -1.48
CSMD3-210ENST00000534172 EFSO43281 561 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 EGFRP00533 1210 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 VSIG8P0DPA2 414 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 COL19A1Q14993 1142 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 ZNF280CQ8ND82 737 aa5.8□□□□□ -1.48
CSMD3-210ENST00000534172 CDC14CA4D256 554 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 TERTO14746 1132 aaKnown RBP5.79□□□□□ -1.48
CSMD3-210ENST00000534172 ARHGAP4P98171 946 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 VWA5B2Q8N398 1253 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 IRF7Q92985 503 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 AVENQ9NQS1 362 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-210ENST00000534172 MAPK1P28482 360 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 MAP2K3P46734 347 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 XKR5Q6UX68 686 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 FOXD4L4Q8WXT5 416 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-210ENST00000534172 PMEPA1Q969W9 287 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 GTPBP3Q969Y2 492 aaKnown RBP5.79□□□□□ -1.48
CSMD3-210ENST00000534172 BCL11AQ9H165 835 aa5.79□□□□□ -1.48
CSMD3-210ENST00000534172 OPLAHO14841 1288 aa5.78□□□□□ -1.48
CSMD3-210ENST00000534172 PDGFAP04085 211 aa5.78□□□□□ -1.48
CSMD3-210ENST00000534172 MAPTP10636 758 aaKnown RBP5.78□□□□□ -1.48
CSMD3-210ENST00000534172 FGFR3P22607 806 aa5.78□□□□□ -1.48
CSMD3-210ENST00000534172 UBAP2LQ14157 1087 aaKnown RBP5.78□□□□□ -1.48
CSMD3-210ENST00000534172 PDE12Q6L8Q7 609 aaKnown RBP5.78□□□□□ -1.48
CSMD3-210ENST00000534172 EDEM1Q92611 657 aa5.78□□□□□ -1.48
CSMD3-210ENST00000534172 RTCBQ9Y3I0 505 aaKnown RBP5.78□□□□□ -1.48
CSMD3-210ENST00000534172 NISCHQ9Y2I1 1504 aa5.78□□□□□ -1.48
CSMD3-210ENST00000534172 POTECB2RU33 542 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 BNIP3LO60238 219 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 FZD6O60353 706 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 ITGAEP38570 1179 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 CCINQ13939 588 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 PCSK7Q16549 785 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 ECM1Q16610 540 aa5.77□□□□□ -1.48
CSMD3-210ENST00000534172 CUEDC1Q9NWM3 386 aaPredicted RBP5.77□□□□□ -1.48
CSMD3-210ENST00000534172 CUX2O14529 1486 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 DNM1Q05193 864 aaKnown RBP5.77□□□□□ -1.49
CSMD3-210ENST00000534172 MTMR3Q13615 1198 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 RGL4Q8IZJ4 473 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 GJD3Q8N144 294 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 CMTR1Q8N1G2 835 aaKnown RBP5.77□□□□□ -1.49
CSMD3-210ENST00000534172 GPR152Q8TDT2 470 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 ASB16Q96NS5 453 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 PNMA5Q96PV4 448 aa5.77□□□□□ -1.49
CSMD3-210ENST00000534172 TMC1Q8TDI8 760 aa5.76□□□□□ -1.49
CSMD3-210ENST00000534172 MBIPQ9NS73 344 aa5.76□□□□□ -1.49
CSMD3-210ENST00000534172 UBAP1LF5GYI3 381 aa5.76□□□□□ -1.49
CSMD3-210ENST00000534172 ZNF428Q96B54 188 aa5.76□□□□□ -1.49
CSMD3-210ENST00000534172 ALKBH8Q96BT7 664 aaKnown RBP5.76□□□□□ -1.49
CSMD3-210ENST00000534172 POLIQ9UNA4 740 aa5.76□□□□□ -1.49
CSMD3-210ENST00000534172 ZBTB39O15060 712 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 THBS1P07996 1170 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 NLRP13Q86W25 1043 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 NUDT16Q96DE0 195 aaKnown RBP5.75□□□□□ -1.49
CSMD3-210ENST00000534172 ABHD17AQ96GS6 310 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 FAM129BQ96TA1 746 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 PRR12Q9ULL5 1215 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 DCDC2BA2VCK2 349 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 XYLBO75191 536 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 MAP3K6O95382 1288 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 BMP4P12644 408 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 MX2P20592 715 aa5.75□□□□□ -1.49
CSMD3-210ENST00000534172 RBM25P49756 843 aaKnown RBP5.74□□□□□ -1.49
CSMD3-210ENST00000534172 PLCB3Q01970 1234 aa5.74□□□□□ -1.49
CSMD3-210ENST00000534172 NFX1Q12986 1120 aaKnown RBP5.74□□□□□ -1.49
CSMD3-210ENST00000534172 TTC39BQ5VTQ0 682 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-210ENST00000534172 SPEM2Q0P670 501 aa5.74□□□□□ -1.49
CSMD3-210ENST00000534172 SFSWAPQ12872 951 aaKnown RBP5.74□□□□□ -1.49
CSMD3-210ENST00000534172 ZNF438Q7Z4V0 828 aa5.74□□□□□ -1.49
CSMD3-210ENST00000534172 GSX2Q9BZM3 304 aa5.74□□□□□ -1.49
CSMD3-210ENST00000534172 DNAJC25Q9H1X3 360 aa5.74□□□□□ -1.49
CSMD3-210ENST00000534172 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-210ENST00000534172 KCNMB2Q9Y691 235 aa5.74□□□□□ -1.49
CSMD3-210ENST00000534172 ARAFP10398 606 aa5.73□□□□□ -1.49
CSMD3-210ENST00000534172 C8orf34Q49A92 452 aa5.73□□□□□ -1.49
CSMD3-210ENST00000534172 ATCAYQ86WG3 371 aa5.73□□□□□ -1.49
CSMD3-210ENST00000534172 CCDC87Q9NVE4 849 aa5.73□□□□□ -1.49
CSMD3-210ENST00000534172 SNX29Q8TEQ0 813 aa5.73□□□□□ -1.49
CSMD3-210ENST00000534172 GDF2Q9UK05 429 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-210ENST00000534172 SIN3BO75182 1162 aa5.72□□□□□ -1.49
CSMD3-210ENST00000534172 SRSF11Q05519 484 aaKnown RBP5.72□□□□□ -1.49
CSMD3-210ENST00000534172 FAM26DQ5JW98 314 aa5.72□□□□□ -1.49
CSMD3-210ENST00000534172 AMOTL2Q9Y2J4 779 aa5.72□□□□□ -1.49
CSMD3-210ENST00000534172 HOXD8P13378 290 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-210ENST00000534172 CD33P20138 364 aa5.72□□□□□ -1.49
CSMD3-210ENST00000534172 SOX18P35713 384 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms