RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 NTSR2O95665 410 aa23.26■■□□□ 1.31
PCF11-206ENST00000533018 IARSP41252 1262 aaKnown RBP23.26■■□□□ 1.31
PCF11-206ENST00000533018 COPS6Q7L5N1 327 aa23.26■■□□□ 1.31
PCF11-206ENST00000533018 UTP14AQ9BVJ6 771 aaKnown RBP23.26■■□□□ 1.31
PCF11-206ENST00000533018 TRIM35Q9UPQ4 493 aa23.26■■□□□ 1.31
PCF11-206ENST00000533018 IQCA1LA6NCM1 817 aa23.25■■□□□ 1.31
PCF11-206ENST00000533018 CHL1O00533 1208 aa23.25■■□□□ 1.31
PCF11-206ENST00000533018 KRT24Q2M2I5 525 aa23.25■■□□□ 1.31
PCF11-206ENST00000533018 LRP10Q7Z4F1 713 aa23.25■■□□□ 1.31
PCF11-206ENST00000533018 XAGE3Q8WTP9 111 aa23.25■■□□□ 1.31
PCF11-206ENST00000533018 NLRP3Q96P20 1036 aa23.25■■□□□ 1.31
PCF11-206ENST00000533018 CHADLQ6NUI6 762 aa23.24■■□□□ 1.31
PCF11-206ENST00000533018 PRKRIP1Q9H875 184 aaPredicted RBP23.24■■□□□ 1.31
PCF11-206ENST00000533018 HOXA10P31260 410 aaPredicted RBP23.23■■□□□ 1.31
PCF11-206ENST00000533018 HSP90AB3PQ58FF7 597 aa23.23■■□□□ 1.31
PCF11-206ENST00000533018 IFFO2Q5TF58 517 aa23.23■■□□□ 1.31
PCF11-206ENST00000533018 CC2D2BQ6DHV5 1058 aa23.23■■□□□ 1.31
PCF11-206ENST00000533018 JDP2Q8WYK2 163 aa23.23■■□□□ 1.31
PCF11-206ENST00000533018 TMX4Q9H1E5 349 aaPredicted RBP23.23■■□□□ 1.31
PCF11-206ENST00000533018 ZNF541Q9H0D2 1346 aa23.23■■□□□ 1.31
PCF11-206ENST00000533018 RIC1Q4ADV7 1423 aa23.23■■□□□ 1.31
PCF11-206ENST00000533018 SCN4AP35499 1836 aa23.22■■□□□ 1.31
PCF11-206ENST00000533018 POTEIP0CG38 1075 aa23.22■■□□□ 1.31
PCF11-206ENST00000533018 POTEJP0CG39 1038 aa23.22■■□□□ 1.31
PCF11-206ENST00000533018 PSMD1Q99460 953 aa23.22■■□□□ 1.31
PCF11-206ENST00000533018 DDX21Q9NR30 783 aaKnown RBP eCLIP23.22■■□□□ 1.31
PCF11-206ENST00000533018 PPEF1O14829 653 aaPredicted RBP23.21■■□□□ 1.31
PCF11-206ENST00000533018 HDGFL1Q5TGJ6 251 aa23.21■■□□□ 1.31
PCF11-206ENST00000533018 C3orf67Q6ZVT6 689 aa23.21■■□□□ 1.31
PCF11-206ENST00000533018 L3MBTL3Q96JM7 780 aaPredicted RBP23.21■■□□□ 1.31
PCF11-206ENST00000533018 CRAMP1Q96RY5 1269 aa23.21■■□□□ 1.31
PCF11-206ENST00000533018 CHPF2Q9P2E5 772 aa23.21■■□□□ 1.31
PCF11-206ENST00000533018 ANKRD36CQ5JPF3 1778 aa23.2■■□□□ 1.3
PCF11-206ENST00000533018 EAPPQ56P03 285 aaPredicted RBP23.2■■□□□ 1.3
PCF11-206ENST00000533018 TAF1DQ9H5J8 278 aaPredicted RBP23.2■■□□□ 1.3
PCF11-206ENST00000533018 GRIPAP1Q4V328 841 aa23.19■■□□□ 1.3
PCF11-206ENST00000533018 JMYQ8N9B5 988 aa23.19■■□□□ 1.3
PCF11-206ENST00000533018 TRMT112Q9UI30 125 aaKnown RBP23.19■■□□□ 1.3
PCF11-206ENST00000533018 FZD9O00144 591 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 TCIRG1Q13488 830 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 SLC10A5Q5PT55 438 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 NLRP10Q86W26 655 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 LARGE2Q8N3Y3 721 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 ZNF428Q96B54 188 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 HACL1Q9UJ83 578 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 CLEC11AQ9Y240 323 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 GJA3Q9Y6H8 435 aa23.18■■□□□ 1.3
PCF11-206ENST00000533018 HCLS1P14317 486 aaPredicted RBP23.17■■□□□ 1.3
PCF11-206ENST00000533018 EIF6P56537 245 aaKnown RBP23.17■■□□□ 1.3
PCF11-206ENST00000533018 LDHDQ86WU2 507 aa23.17■■□□□ 1.3
PCF11-206ENST00000533018 CFAP44Q96MT7 982 aa23.17■■□□□ 1.3
PCF11-206ENST00000533018 RNF123Q5XPI4 1314 aa23.16■■□□□ 1.3
PCF11-206ENST00000533018 SLC51AQ86UW1 340 aa23.16■■□□□ 1.3
PCF11-206ENST00000533018 GPC2Q8N158 579 aa23.16■■□□□ 1.3
PCF11-206ENST00000533018 DBF4Q9UBU7 674 aaPredicted RBP23.16■■□□□ 1.3
PCF11-206ENST00000533018 ABCC4O15439 1325 aa23.15■■□□□ 1.3
PCF11-206ENST00000533018 APAF1O14727 1248 aa23.15■■□□□ 1.3
PCF11-206ENST00000533018 EPHX2P34913 555 aa23.15■■□□□ 1.3
PCF11-206ENST00000533018 SNED1Q8TER0 1413 aa23.15■■□□□ 1.3
PCF11-206ENST00000533018 SH3TC1Q8TE82 1336 aa23.14■■□□□ 1.3
PCF11-206ENST00000533018 HOXB7P09629 217 aa23.14■■□□□ 1.29
PCF11-206ENST00000533018 DUSP27Q5VZP5 1158 aa23.14■■□□□ 1.29
PCF11-206ENST00000533018 ANKRD13DQ6ZTN6 518 aa23.14■■□□□ 1.29
PCF11-206ENST00000533018 MBIPQ9NS73 344 aa23.14■■□□□ 1.29
PCF11-206ENST00000533018 DDX46Q7L014 1031 aaKnown RBP23.13■■□□□ 1.29
PCF11-206ENST00000533018 PLBD2Q8NHP8 589 aa23.13■■□□□ 1.29
PCF11-206ENST00000533018 ATP6V0A2Q9Y487 856 aa23.13■■□□□ 1.29
PCF11-206ENST00000533018 LAMB2P55268 1798 aa23.13■■□□□ 1.29
PCF11-206ENST00000533018 PPIP5K2O43314 1243 aa23.12■■□□□ 1.29
PCF11-206ENST00000533018 PNMA8AQ86V59 439 aaPredicted RBP23.12■■□□□ 1.29
PCF11-206ENST00000533018 NIM1KQ8IY84 436 aa23.12■■□□□ 1.29
PCF11-206ENST00000533018 CREBZFQ9NS37 354 aa23.12■■□□□ 1.29
PCF11-206ENST00000533018 HYPKQ9NX55 129 aa23.12■■□□□ 1.29
PCF11-206ENST00000533018 BBOX1O75936 387 aa23.11■■□□□ 1.29
PCF11-206ENST00000533018 LMOD1P29536 600 aaPredicted RBP23.11■■□□□ 1.29
PCF11-206ENST00000533018 CALD1Q05682 793 aaKnown RBP23.11■■□□□ 1.29
PCF11-206ENST00000533018 COL4A5P29400 1685 aa23.1■■□□□ 1.29
PCF11-206ENST00000533018 ATP5J2-PTCD1G3V325 749 aa23.1■■□□□ 1.29
PCF11-206ENST00000533018 ELL2O00472 640 aaPredicted RBP23.1■■□□□ 1.29
PCF11-206ENST00000533018 AOC3Q16853 763 aa23.1■■□□□ 1.29
PCF11-206ENST00000533018 DPP8Q6V1X1 898 aaPredicted RBP23.1■■□□□ 1.29
PCF11-206ENST00000533018 SUPT20HQ8NEM7 779 aa23.1■■□□□ 1.29
PCF11-206ENST00000533018 MKRN1Q9UHC7 482 aaKnown RBP23.1■■□□□ 1.29
PCF11-206ENST00000533018 TAF1P21675 1872 aa23.09■■□□□ 1.29
PCF11-206ENST00000533018 GNAI1P63096 354 aa23.09■■□□□ 1.29
PCF11-206ENST00000533018 IFT57Q9NWB7 429 aa23.09■■□□□ 1.29
PCF11-206ENST00000533018 GRAPQ13588 217 aa23.08■■□□□ 1.29
PCF11-206ENST00000533018 RTL5Q5HYW3 569 aaPredicted RBP23.08■■□□□ 1.29
PCF11-206ENST00000533018 SP8Q8IXZ3 490 aa23.08■■□□□ 1.29
PCF11-206ENST00000533018 MPNDQ8N594 471 aa23.08■■□□□ 1.29
PCF11-206ENST00000533018 GRAPLQ8TC17 118 aaPredicted RBP23.08■■□□□ 1.29
PCF11-206ENST00000533018 FAM89AQ96GI7 184 aa23.08■■□□□ 1.29
PCF11-206ENST00000533018 ZNF853P0CG23 659 aa23.07■■□□□ 1.28
PCF11-206ENST00000533018 MAP1SQ66K74 1059 aaPredicted RBP23.07■■□□□ 1.28
PCF11-206ENST00000533018 RIC3Q7Z5B4 369 aa23.07■■□□□ 1.28
PCF11-206ENST00000533018 PASKQ96RG2 1323 aa23.07■■□□□ 1.28
PCF11-206ENST00000533018 GOLGA2Q08379 1002 aa23.06■■□□□ 1.28
PCF11-206ENST00000533018 CNTROBQ8N137 903 aa23.06■■□□□ 1.28
PCF11-206ENST00000533018 ISCA1Q9BUE6 129 aa23.06■■□□□ 1.28
PCF11-206ENST00000533018 VPS33BQ9H267 617 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms