RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 ZNF652Q9Y2D9 606 aa12.3□□□□□ -0.44
CHMP4A-205ENST00000531158 PDE4DIPQ5VU43 2346 aa12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 EPHX2P34913 555 aa12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 IARSP41252 1262 aaKnown RBP12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 EAPPQ56P03 285 aaPredicted RBP12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 TPTE2Q6XPS3 522 aa12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 NPM2Q86SE8 214 aaKnown RBP12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 NUTM1Q86Y26 1132 aa12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 HACL1Q9UJ83 578 aa12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 UBN2Q6ZU65 1347 aa12.29□□□□□ -0.44
CHMP4A-205ENST00000531158 FMR1Q06787 632 aaKnown RBP eCLIP12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 GRM1Q13255 1194 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 DGKZQ13574 1117 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 MAP1SQ66K74 1059 aaPredicted RBP12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 TTLL7Q6ZT98 887 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 C3orf67Q6ZVT6 689 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 RTKN2Q8IZC4 609 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 SYNE4Q8N205 404 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 CLEC11AQ9Y240 323 aa12.28□□□□□ -0.44
CHMP4A-205ENST00000531158 HTATSF1O43719 755 aaKnown RBP12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 PAXIP1Q6ZW49 1069 aaPredicted RBP12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 RTF1Q92541 710 aaKnown RBP12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 CFAP53Q96M91 514 aa12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 PSMD1Q99460 953 aa12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 LRRC37AA6NMS7 1700 aa12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 DDX60Q8IY21 1712 aaKnown RBP12.27□□□□□ -0.45
CHMP4A-205ENST00000531158 COL4A1P02462 1669 aa12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 SCNN1DP51172 638 aa12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 SOX10P56693 466 aa12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 TAF7Q15545 349 aaPredicted RBP12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 CNTROBQ8N137 903 aa12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 GPC2Q8N158 579 aa12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 THUMPD2Q9BTF0 503 aaKnown RBP12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 POLR2AP24928 1970 aaKnown RBP12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 IBTKQ9P2D0 1353 aaPredicted RBP12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 DUOX1Q9NRD9 1551 aa12.26□□□□□ -0.45
CHMP4A-205ENST00000531158 ALDH1B1P30837 517 aa12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 HOXA10P31260 410 aaPredicted RBP12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 LRP10Q7Z4F1 713 aa12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 NGEFQ8N5V2 710 aa12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 CAPNS2Q96L46 248 aa12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 GPR101Q96P66 508 aaPredicted RBP12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 NUDCQ9Y266 331 aa12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 MAP3K15Q6ZN16 1313 aa12.25□□□□□ -0.45
CHMP4A-205ENST00000531158 ERVV-1B6SEH8 477 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 NTSR2O95665 410 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 GPTP24298 496 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 EPS15P42566 896 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 ECE1P42892 770 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 EIF4A1P60842 406 aaKnown RBP12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 SUSD4Q5VX71 490 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 PLEKHF1Q96S99 279 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 ZBTB3Q9H5J0 574 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 CASP8AP2Q9UKL3 1982 aa12.24□□□□□ -0.45
CHMP4A-205ENST00000531158 PNMA8AQ86V59 439 aaPredicted RBP12.23□□□□□ -0.45
CHMP4A-205ENST00000531158 ZNF34Q8IZ26 560 aa12.23□□□□□ -0.45
CHMP4A-205ENST00000531158 DDX21Q9NR30 783 aaKnown RBP eCLIP12.23□□□□□ -0.45
CHMP4A-205ENST00000531158 TRAF5O00463 557 aa12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 MYL6BP14649 208 aa12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 GTF2E1P29083 439 aaPredicted RBP12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 PDIA6Q15084 440 aa12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 CYP4F22Q6NT55 531 aa12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 RRP7AQ9Y3A4 280 aaKnown RBP12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 GJA3Q9Y6H8 435 aa12.22□□□□□ -0.45
CHMP4A-205ENST00000531158 TCERG1O14776 1098 aaKnown RBP12.21□□□□□ -0.45
CHMP4A-205ENST00000531158 CST9Q5W186 159 aa12.21□□□□□ -0.45
CHMP4A-205ENST00000531158 JDP2Q8WYK2 163 aa12.21□□□□□ -0.45
CHMP4A-205ENST00000531158 CRAMP1Q96RY5 1269 aa12.21□□□□□ -0.45
CHMP4A-205ENST00000531158 NYXQ9GZU5 481 aa12.21□□□□□ -0.45
CHMP4A-205ENST00000531158 SCN9AQ15858 1988 aa12.21□□□□□ -0.46
CHMP4A-205ENST00000531158 PPEF1O14829 653 aaPredicted RBP12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 CA12O43570 354 aa12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 PROSER3Q2NL68 480 aa12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 CC2D2BQ6DHV5 1058 aa12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 GIGYF2Q6Y7W6 1299 aaKnown RBP12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 KIF6Q6ZMV9 814 aa12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 LARGE2Q8N3Y3 721 aa12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 RPGRQ92834 1020 aaKnown RBP12.2□□□□□ -0.46
CHMP4A-205ENST00000531158 ABCC4O15439 1325 aa12.19□□□□□ -0.46
CHMP4A-205ENST00000531158 AOC2O75106 756 aa12.19□□□□□ -0.46
CHMP4A-205ENST00000531158 EIF6P56537 245 aaKnown RBP12.19□□□□□ -0.46
CHMP4A-205ENST00000531158 NFE2L2Q16236 605 aa12.19□□□□□ -0.46
CHMP4A-205ENST00000531158 AOC3Q16853 763 aa12.19□□□□□ -0.46
CHMP4A-205ENST00000531158 GCC1Q96CN9 775 aa12.19□□□□□ -0.46
CHMP4A-205ENST00000531158 PSME4Q14997 1843 aa12.18□□□□□ -0.46
CHMP4A-205ENST00000531158 ANXA1P04083 346 aa12.18□□□□□ -0.46
CHMP4A-205ENST00000531158 MAP2K2P36507 400 aa12.18□□□□□ -0.46
CHMP4A-205ENST00000531158 PNISRQ8TF01 805 aaKnown RBP12.18□□□□□ -0.46
CHMP4A-205ENST00000531158 GPRC5DQ9NZD1 345 aa12.18□□□□□ -0.46
CHMP4A-205ENST00000531158 ERBB4Q15303 1308 aa12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 PPIP5K2O43314 1243 aa12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 LMOD1P29536 600 aaPredicted RBP12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 SLC10A5Q5PT55 438 aa12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 USP50Q70EL3 339 aaPredicted RBP12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 RBM17Q96I25 401 aaKnown RBP12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 RTFDC1Q9BY42 306 aaPredicted RBP12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 ATP6V0A2Q9Y487 856 aa12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 TLL2Q9Y6L7 1015 aa12.17□□□□□ -0.46
CHMP4A-205ENST00000531158 ZNF646O15015 1829 aaPredicted RBP12.16□□□□□ -0.46
CHMP4A-205ENST00000531158 SHTN1A0MZ66 631 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms