RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 PLXNC1O60486 1568 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 TULP2O00295 520 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 CALRP27797 417 aaKnown RBP11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 TMCO3Q6UWJ1 677 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 CEP120Q8N960 986 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 SHANK2Q9UPX8 1470 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 HMGB1P09429 215 aaKnown RBP11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 CLCN6P51797 869 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 RAB11FIP4Q86YS3 637 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 PRPF38AQ8NAV1 312 aaKnown RBP11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 CYP46A1Q9Y6A2 500 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 MYO5CQ9NQX4 1742 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 SRGAP3O43295 1099 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 SDF4Q9BRK5 362 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 ZNF446Q9NWS9 450 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 LCMT1Q9UIC8 334 aa11.82□□□□□ -0.52
PDGFRB-207ENST00000520579 BMS1Q14692 1282 aaKnown RBP11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 LRRC8AQ8IWT6 810 aa11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 PDILTQ8N807 584 aa11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 CARD6Q9BX69 1037 aa11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 C14orf93Q9H972 538 aaKnown RBP11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 JRKLQ9Y4A0 524 aa11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 NDUFB9Q9Y6M9 179 aa11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 IFIT2P09913 472 aaKnown RBP11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 UBTFL1P0CB47 393 aaPredicted RBP11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 FUCA2Q9BTY2 467 aa11.81□□□□□ -0.52
PDGFRB-207ENST00000520579 RPAINQ86UA6 219 aa11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 SMARCE1Q969G3 411 aa11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 H0YHG0 523 aa11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 SARNPP82979 210 aaKnown RBP11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 PPARDQ03181 441 aa11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 MCM6Q14566 821 aa11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 CXorf56Q9H5V9 222 aa11.8□□□□□ -0.52
PDGFRB-207ENST00000520579 ATP10AO60312 1499 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 RAPGEF3O95398 923 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 OAS2P29728 719 aaKnown RBP11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 ME1P48163 572 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 SAMD9LQ8IVG5 1584 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 ZKSCAN1P17029 563 aaPredicted RBP11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 GUCY2CP25092 1073 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 CASQ1P31415 396 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 HSPA4P34932 840 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 PPP1R42Q7Z4L9 355 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 TPCN1Q9ULQ1 816 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 PA2G4Q9UQ80 394 aaKnown RBP11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 CROCC2H7BZ55 1655 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 LMOD1P29536 600 aaPredicted RBP11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 NUTM2GQ5VZR2 741 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 ERO1AQ96HE7 468 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 CCDC8Q9H0W5 538 aaPredicted RBP11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 TAF6LQ9Y6J9 622 aa11.79□□□□□ -0.52
PDGFRB-207ENST00000520579 PNMA6AP0CW24 399 aaPredicted RBP11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 CCT2P78371 535 aaKnown RBP11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 NOP2P46087 812 aaKnown RBP11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 CCDC91Q7Z6B0 441 aa11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 CREBRFQ8IUR6 639 aa11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 FAM227BQ96M60 508 aa11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 IFNKQ9P0W0 207 aa11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 SF3A1Q15459 793 aaKnown RBP11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 CNTROBQ8N137 903 aa11.78□□□□□ -0.52
PDGFRB-207ENST00000520579 RGS12O14924 1447 aa11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 CCDC73Q6ZRK6 1079 aa11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 CCAR1Q8IX12 1150 aaKnown RBP11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 LEO1Q8WVC0 666 aaPredicted RBP11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 EDC3Q96F86 508 aaKnown RBP11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 COG3Q96JB2 828 aa11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 BOLA2Q9H3K6 86 aa11.77□□□□□ -0.52
PDGFRB-207ENST00000520579 ABCA8O94911 1581 aa11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 KINO60870 393 aaKnown RBP11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 ARMCX6Q7L4S7 300 aa11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 BRF1Q92994 677 aa11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 MADDQ8WXG6 1647 aa11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 ZSCAN26Q16670 478 aa11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 NOM1Q5C9Z4 860 aaKnown RBP11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 OTUD7BQ6GQQ9 843 aa11.77□□□□□ -0.53
PDGFRB-207ENST00000520579 ARGLU1Q9NWB6 273 aaPredicted RBP11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 HYPKQ9NX55 129 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 DONSONQ9NYP3 566 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 WWC2Q6AWC2 1192 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 CHST3Q7LGC8 479 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 PGBD1Q96JS3 809 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 HINFPQ9BQA5 517 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 RNF17Q9BXT8 1623 aaKnown RBP11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 MYOM1P52179 1685 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 SGSM2O43147 1006 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 SFPQP23246 707 aaKnown RBP eCLIP11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 PLA2G4AP47712 749 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 FLIIQ13045 1269 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 HSP90AB2PQ58FF8 381 aa11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 RBM8AQ9Y5S9 174 aaKnown RBP11.76□□□□□ -0.53
PDGFRB-207ENST00000520579 KARSQ15046 597 aaKnown RBP11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 TTC31Q49AM3 519 aaPredicted RBP11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 PHAXQ9H814 394 aaKnown RBP11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 BRMS1Q9HCU9 246 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 A0A1B0GVL5 298 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 CHGBP05060 677 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 MAP2K2P36507 400 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 EVCP57679 992 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 BLOC1S2Q6QNY1 142 aa11.75□□□□□ -0.53
PDGFRB-207ENST00000520579 FSIP1Q8NA03 581 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms