RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 NDUFB9Q9Y6M9 179 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 GOLGA6L4A6NEF3 574 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 GIGYF1O75420 1035 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 BLOC1S2Q6QNY1 142 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 TM6SF1Q9BZW5 370 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 SLC27A2O14975 620 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 KRT85P78386 507 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 AKAP4Q5JQC9 854 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 KAZALD1Q96I82 304 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 PYCARDQ9ULZ3 195 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 XRN1Q8IZH2 1706 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 USP42Q9H9J4 1324 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 GRM8O00222 908 aa11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 HOXB7P09629 217 aa11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 MTX1Q13505 466 aa11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 MYRIPQ8NFW9 859 aa11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 MAP4K1Q92918 833 aa11.02□□□□□ -0.64
LIMCH1-215ENST00000512632 NALCNQ8IZF0 1738 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 RNMTO43148 476 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 CCDC192P0DO97 292 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 MYL6BP14649 208 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 LUZP1Q86V48 1076 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 ERC1Q8IUD2 1116 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 PXDNLA1KZ92 1463 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 ALDH1L1O75891 902 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 SLC39A6Q13433 755 aa11.02□□□□□ -0.65
LIMCH1-215ENST00000512632 CHGBP05060 677 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 LARP1Q6PKG0 1096 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 CHMP4AQ9BY43 222 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 DACT1Q9NYF0 836 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 NWD1Q149M9 1564 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 NUP62CLQ9H1M0 184 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 PIP4K2AP48426 406 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 RIC3Q7Z5B4 369 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 DDX11Q96FC9 970 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 UBR1Q8IWV7 1749 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 ZNF589Q86UQ0 364 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 LINS1Q8NG48 757 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 PRDM10Q9NQV6 1147 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 TOPAZ1Q8N9V7 1692 aa11.01□□□□□ -0.65
LIMCH1-215ENST00000512632 PSMA5P28066 241 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 MAP3K11Q16584 847 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 KCNF1Q9H3M0 494 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 FOSBP53539 338 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 DIP2AQ14689 1571 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 DRC7Q8IY82 874 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 PIK3C2AO00443 1686 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 RGPD8O14715 1765 aaPredicted RBP11□□□□□ -0.65
LIMCH1-215ENST00000512632 FAM208AQ9UK61 1670 aaKnown RBP11□□□□□ -0.65
LIMCH1-215ENST00000512632 JAK2O60674 1132 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 PPFIA3O75145 1194 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 CEBPZQ03701 1054 aaKnown RBP11□□□□□ -0.65
LIMCH1-215ENST00000512632 TYRO3Q06418 890 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 TNMDQ9H2S6 317 aa11□□□□□ -0.65
LIMCH1-215ENST00000512632 PTGS1P23219 599 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 RNF20Q5VTR2 975 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 KCNB2Q92953 911 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 SPATA32Q96LK8 384 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 LRRC2Q9BYS8 371 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 EPHA10Q5JZY3 1008 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 KIAA1524Q8TCG1 905 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 BICD2Q8TD16 824 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 HDAC5Q9UQL6 1122 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 DDX58O95786 925 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 IGKV5-2P06315 115 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 PDCP20941 246 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 HMGN5P82970 282 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 FAM200AQ8TCP9 573 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 PRIMPOLQ96LW4 560 aa10.99□□□□□ -0.65
LIMCH1-215ENST00000512632 TUBGCP6Q96RT7 1819 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 RPS6KB1P23443 525 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 TOB2Q14106 344 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 ANO6Q4KMQ2 910 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 CCDC129Q6ZRS4 1044 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 SEC62Q99442 399 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 MRVI1Q9Y6F6 885 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 GCP02774 474 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 ZNF710Q8N1W2 664 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 BCL11BQ9C0K0 894 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 KIF3AQ9Y496 699 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 FMN2Q9NZ56 1722 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 HIP1O00291 1037 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 LRMPQ12912 555 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 CCDC186Q7Z3E2 898 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 MYD88Q99836 296 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 NRBP1Q9UHY1 535 aa10.98□□□□□ -0.65
LIMCH1-215ENST00000512632 HSP90B1P14625 803 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 FGD1P98174 961 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 ANKRD24Q8TF21 1146 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 DNAJC2Q99543 621 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 AMOTQ4VCS5 1084 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 COPS6Q7L5N1 327 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 MTERF4Q7Z6M4 381 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 ORAI2Q96SN7 254 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 TRIM5Q9C035 493 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 CBX8Q9HC52 389 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 DDX21Q9NR30 783 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 SPTLC3Q9NUV7 552 aa10.97□□□□□ -0.65
LIMCH1-215ENST00000512632 XAGE3Q8WTP9 111 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms