RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 CRAMP1Q96RY5 1269 aa16.33■□□□□ 0.2
PDPN-208ENST00000509009 DDX21Q9NR30 783 aaKnown RBP eCLIP16.33■□□□□ 0.2
PDPN-208ENST00000509009 CC2D2BQ6DHV5 1058 aa16.32■□□□□ 0.2
PDPN-208ENST00000509009 RPGRQ92834 1020 aaKnown RBP16.32■□□□□ 0.2
PDPN-208ENST00000509009 RBM17Q96I25 401 aaKnown RBP16.32■□□□□ 0.2
PDPN-208ENST00000509009 CFAP44Q96MT7 982 aa16.32■□□□□ 0.2
PDPN-208ENST00000509009 UTP14AQ9BVJ6 771 aaKnown RBP16.32■□□□□ 0.2
PDPN-208ENST00000509009 TNRC6CQ9HCJ0 1690 aaKnown RBP16.32■□□□□ 0.2
PDPN-208ENST00000509009 TCIRG1Q13488 830 aa16.31■□□□□ 0.2
PDPN-208ENST00000509009 NLRP3Q96P20 1036 aa16.31■□□□□ 0.2
PDPN-208ENST00000509009 PSMD1Q99460 953 aa16.31■□□□□ 0.2
PDPN-208ENST00000509009 DICER1Q9UPY3 1922 aaKnown RBP16.31■□□□□ 0.2
PDPN-208ENST00000509009 RIC1Q4ADV7 1423 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 APAF1O14727 1248 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 ZNF853P0CG23 659 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
PDPN-208ENST00000509009 HSP90AB3PQ58FF7 597 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 NLRP10Q86W26 655 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 KLRG1Q96E93 195 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 ARFGEF2Q9Y6D5 1785 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 WDR90Q96KV7 1748 aa16.3■□□□□ 0.2
PDPN-208ENST00000509009 TIAM2Q8IVF5 1701 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 FZD9O00144 591 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 HOXB7P09629 217 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 GRIPAP1Q4V328 841 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 HDGFL1Q5TGJ6 251 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 L3MBTL3Q96JM7 780 aaPredicted RBP16.29■□□□□ 0.2
PDPN-208ENST00000509009 CHPF2Q9P2E5 772 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 CACNA1SQ13698 1873 aa16.29■□□□□ 0.2
PDPN-208ENST00000509009 TCERG1O14776 1098 aaKnown RBP16.28■□□□□ 0.2
PDPN-208ENST00000509009 POTEIP0CG38 1075 aa16.28■□□□□ 0.2
PDPN-208ENST00000509009 POTEJP0CG39 1038 aa16.28■□□□□ 0.2
PDPN-208ENST00000509009 DUSP27Q5VZP5 1158 aa16.28■□□□□ 0.2
PDPN-208ENST00000509009 ANKRD13DQ6ZTN6 518 aa16.28■□□□□ 0.2
PDPN-208ENST00000509009 MBIPQ9NS73 344 aa16.28■□□□□ 0.2
PDPN-208ENST00000509009 SNED1Q8TER0 1413 aa16.28■□□□□ 0.2
PDPN-208ENST00000509009 ZNF541Q9H0D2 1346 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 IQCA1LA6NCM1 817 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 HCLS1P14317 486 aaPredicted RBP16.27■□□□□ 0.2
PDPN-208ENST00000509009 CHADLQ6NUI6 762 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 SLC51AQ86UW1 340 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 JMYQ8N9B5 988 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 PLBD2Q8NHP8 589 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 JDP2Q8WYK2 163 aa16.27■□□□□ 0.2
PDPN-208ENST00000509009 TAF1DQ9H5J8 278 aaPredicted RBP16.27■□□□□ 0.2
PDPN-208ENST00000509009 DBF4Q9UBU7 674 aaPredicted RBP16.27■□□□□ 0.2
PDPN-208ENST00000509009 TRMT112Q9UI30 125 aaKnown RBP16.27■□□□□ 0.2
PDPN-208ENST00000509009 RNF123Q5XPI4 1314 aa16.26■□□□□ 0.19
PDPN-208ENST00000509009 PPEF1O14829 653 aaPredicted RBP16.26■□□□□ 0.19
PDPN-208ENST00000509009 ATP6V0A2Q9Y487 856 aa16.26■□□□□ 0.19
PDPN-208ENST00000509009 BBOX1O75936 387 aa16.25■□□□□ 0.19
PDPN-208ENST00000509009 GNAI1P63096 354 aa16.25■□□□□ 0.19
PDPN-208ENST00000509009 CCDC184Q52MB2 194 aa16.25■□□□□ 0.19
PDPN-208ENST00000509009 ISCA1Q9BUE6 129 aa16.25■□□□□ 0.19
PDPN-208ENST00000509009 IFT57Q9NWB7 429 aa16.25■□□□□ 0.19
PDPN-208ENST00000509009 HYPKQ9NX55 129 aa16.25■□□□□ 0.19
PDPN-208ENST00000509009 CALD1Q05682 793 aaKnown RBP16.24■□□□□ 0.19
PDPN-208ENST00000509009 ZNF428Q96B54 188 aa16.24■□□□□ 0.19
PDPN-208ENST00000509009 HACL1Q9UJ83 578 aa16.24■□□□□ 0.19
PDPN-208ENST00000509009 SH3TC1Q8TE82 1336 aa16.23■□□□□ 0.19
PDPN-208ENST00000509009 ATP5J2-PTCD1G3V325 749 aa16.23■□□□□ 0.19
PDPN-208ENST00000509009 ELL2O00472 640 aaPredicted RBP16.23■□□□□ 0.19
PDPN-208ENST00000509009 LDHDQ86WU2 507 aa16.23■□□□□ 0.19
PDPN-208ENST00000509009 SP8Q8IXZ3 490 aa16.23■□□□□ 0.19
PDPN-208ENST00000509009 GPC2Q8N158 579 aa16.23■□□□□ 0.19
PDPN-208ENST00000509009 LARGE2Q8N3Y3 721 aa16.23■□□□□ 0.19
PDPN-208ENST00000509009 TMX4Q9H1E5 349 aaPredicted RBP16.23■□□□□ 0.19
PDPN-208ENST00000509009 ABCC4O15439 1325 aa16.22■□□□□ 0.19
PDPN-208ENST00000509009 EIF6P56537 245 aaKnown RBP16.22■□□□□ 0.19
PDPN-208ENST00000509009 TRIM28Q13263 835 aaKnown RBP16.22■□□□□ 0.19
PDPN-208ENST00000509009 IFFO2Q5TF58 517 aa16.22■□□□□ 0.19
PDPN-208ENST00000509009 DDX46Q7L014 1031 aaKnown RBP16.22■□□□□ 0.19
PDPN-208ENST00000509009 C8orf58Q8NAV2 365 aa16.22■□□□□ 0.19
PDPN-208ENST00000509009 EPHX2P34913 555 aa16.21■□□□□ 0.19
PDPN-208ENST00000509009 FAM89AQ96GI7 184 aa16.21■□□□□ 0.19
PDPN-208ENST00000509009 RTFDC1Q9BY42 306 aaPredicted RBP16.21■□□□□ 0.19
PDPN-208ENST00000509009 VPS33BQ9H267 617 aa16.21■□□□□ 0.19
PDPN-208ENST00000509009 GJA3Q9Y6H8 435 aa16.21■□□□□ 0.19
PDPN-208ENST00000509009 ITGBL1O95965 494 aaPredicted RBP16.2■□□□□ 0.18
PDPN-208ENST00000509009 ZEB1P37275 1124 aaPredicted RBP16.2■□□□□ 0.18
PDPN-208ENST00000509009 EAPPQ56P03 285 aaPredicted RBP16.2■□□□□ 0.18
PDPN-208ENST00000509009 PNMA8AQ86V59 439 aaPredicted RBP16.2■□□□□ 0.18
PDPN-208ENST00000509009 PHAXQ9H814 394 aaKnown RBP16.2■□□□□ 0.18
PDPN-208ENST00000509009 CLEC11AQ9Y240 323 aa16.2■□□□□ 0.18
PDPN-208ENST00000509009 PASKQ96RG2 1323 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 COL4A5P29400 1685 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 PPIP5K2O43314 1243 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 GRAPQ13588 217 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 SF3B3Q15393 1217 aaKnown RBP16.19■□□□□ 0.18
PDPN-208ENST00000509009 AOC3Q16853 763 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 RIC3Q7Z5B4 369 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 MPNDQ8N594 471 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 SUPT20HQ8NEM7 779 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 GRAPLQ8TC17 118 aaPredicted RBP16.19■□□□□ 0.18
PDPN-208ENST00000509009 CREBZFQ9NS37 354 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 PCNTO95613 3336 aa16.19■□□□□ 0.18
PDPN-208ENST00000509009 SCN4AP35499 1836 aa16.18■□□□□ 0.18
PDPN-208ENST00000509009 DPP8Q6V1X1 898 aaPredicted RBP16.18■□□□□ 0.18
PDPN-208ENST00000509009 NIM1KQ8IY84 436 aa16.18■□□□□ 0.18
PDPN-208ENST00000509009 EPS15P42566 896 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms