RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 C7orf43Q8WVR3 580 aa14.47□□□□□ -0.09
PTPN13-207ENST00000508063 LAS1LQ9Y4W2 734 aaKnown RBP14.47□□□□□ -0.09
PTPN13-207ENST00000508063 HSP90AB3PQ58FF7 597 aa14.46□□□□□ -0.09
PTPN13-207ENST00000508063 NUTM1Q86Y26 1132 aa14.46□□□□□ -0.09
PTPN13-207ENST00000508063 ZNF34Q8IZ26 560 aa14.46□□□□□ -0.09
PTPN13-207ENST00000508063 RPGRQ92834 1020 aaKnown RBP14.46□□□□□ -0.09
PTPN13-207ENST00000508063 TRIM35Q9UPQ4 493 aa14.46□□□□□ -0.09
PTPN13-207ENST00000508063 RIC1Q4ADV7 1423 aa14.46□□□□□ -0.09
PTPN13-207ENST00000508063 ZEB1P37275 1124 aaPredicted RBP14.45□□□□□ -0.1
PTPN13-207ENST00000508063 FKBP4Q02790 459 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTPN13-207ENST00000508063 PDIA6Q15084 440 aa14.45□□□□□ -0.1
PTPN13-207ENST00000508063 CRY2Q49AN0 593 aa14.45□□□□□ -0.1
PTPN13-207ENST00000508063 SUSD4Q5VX71 490 aa14.45□□□□□ -0.1
PTPN13-207ENST00000508063 CC2D2BQ6DHV5 1058 aa14.45□□□□□ -0.1
PTPN13-207ENST00000508063 UBN2Q6ZU65 1347 aa14.44□□□□□ -0.1
PTPN13-207ENST00000508063 HOXB7P09629 217 aa14.44□□□□□ -0.1
PTPN13-207ENST00000508063 CALD1Q05682 793 aaKnown RBP14.44□□□□□ -0.1
PTPN13-207ENST00000508063 GRIPAP1Q4V328 841 aa14.44□□□□□ -0.1
PTPN13-207ENST00000508063 LRP10Q7Z4F1 713 aa14.44□□□□□ -0.1
PTPN13-207ENST00000508063 DDX21Q9NR30 783 aaKnown RBP eCLIP14.44□□□□□ -0.1
PTPN13-207ENST00000508063 ABCC12Q96J65 1359 aa14.44□□□□□ -0.1
PTPN13-207ENST00000508063 WDR90Q96KV7 1748 aa14.44□□□□□ -0.1
PTPN13-207ENST00000508063 RNF123Q5XPI4 1314 aa14.43□□□□□ -0.1
PTPN13-207ENST00000508063 NTSR2O95665 410 aa14.43□□□□□ -0.1
PTPN13-207ENST00000508063 COPS6Q7L5N1 327 aa14.43□□□□□ -0.1
PTPN13-207ENST00000508063 RBM17Q96I25 401 aaKnown RBP14.43□□□□□ -0.1
PTPN13-207ENST00000508063 CFAP44Q96MT7 982 aa14.43□□□□□ -0.1
PTPN13-207ENST00000508063 NLRP3Q96P20 1036 aa14.43□□□□□ -0.1
PTPN13-207ENST00000508063 UTP14AQ9BVJ6 771 aaKnown RBP14.43□□□□□ -0.1
PTPN13-207ENST00000508063 HOXA10P31260 410 aaPredicted RBP14.42□□□□□ -0.1
PTPN13-207ENST00000508063 AIMP1Q12904 312 aaKnown RBP14.42□□□□□ -0.1
PTPN13-207ENST00000508063 PROSER3Q2NL68 480 aa14.42□□□□□ -0.1
PTPN13-207ENST00000508063 HDGFL1Q5TGJ6 251 aa14.42□□□□□ -0.1
PTPN13-207ENST00000508063 NECTIN2Q92692 538 aa14.42□□□□□ -0.1
PTPN13-207ENST00000508063 TMX4Q9H1E5 349 aaPredicted RBP14.42□□□□□ -0.1
PTPN13-207ENST00000508063 IQCA1LA6NCM1 817 aa14.41□□□□□ -0.1
PTPN13-207ENST00000508063 ANXA1P04083 346 aa14.41□□□□□ -0.1
PTPN13-207ENST00000508063 XAGE3Q8WTP9 111 aa14.41□□□□□ -0.1
PTPN13-207ENST00000508063 CRAMP1Q96RY5 1269 aa14.41□□□□□ -0.1
PTPN13-207ENST00000508063 PSMD1Q99460 953 aa14.41□□□□□ -0.1
PTPN13-207ENST00000508063 ZNF277Q9NRM2 450 aaPredicted RBP14.41□□□□□ -0.1
PTPN13-207ENST00000508063 ANKRD36CQ5JPF3 1778 aa14.4□□□□□ -0.1
PTPN13-207ENST00000508063 DDNO94850 711 aaPredicted RBP14.4□□□□□ -0.1
PTPN13-207ENST00000508063 IARSP41252 1262 aaKnown RBP14.4□□□□□ -0.1
PTPN13-207ENST00000508063 TCIRG1Q13488 830 aa14.4□□□□□ -0.1
PTPN13-207ENST00000508063 SLC10A5Q5PT55 438 aa14.4□□□□□ -0.1
PTPN13-207ENST00000508063 SYNE4Q8N205 404 aa14.4□□□□□ -0.1
PTPN13-207ENST00000508063 DBF4Q9UBU7 674 aaPredicted RBP14.4□□□□□ -0.1
PTPN13-207ENST00000508063 POTECB2RU33 542 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 APAF1O14727 1248 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 GNAI1P63096 354 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 KRT24Q2M2I5 525 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 DNAJC5GQ8N7S2 189 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 CHMP4AQ9BY43 222 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 IFT57Q9NWB7 429 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 HYPKQ9NX55 129 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 CHPF2Q9P2E5 772 aa14.39□□□□□ -0.11
PTPN13-207ENST00000508063 PPEF1O14829 653 aaPredicted RBP14.38□□□□□ -0.11
PTPN13-207ENST00000508063 DUSP27Q5VZP5 1158 aa14.38□□□□□ -0.11
PTPN13-207ENST00000508063 OLFM4Q6UX06 510 aa14.38□□□□□ -0.11
PTPN13-207ENST00000508063 NLRP10Q86W26 655 aa14.38□□□□□ -0.11
PTPN13-207ENST00000508063 PLBD2Q8NHP8 589 aa14.38□□□□□ -0.11
PTPN13-207ENST00000508063 JDP2Q8WYK2 163 aa14.38□□□□□ -0.11
PTPN13-207ENST00000508063 MBIPQ9NS73 344 aa14.38□□□□□ -0.11
PTPN13-207ENST00000508063 ZBTB12Q9Y330 459 aaPredicted RBP14.38□□□□□ -0.11
PTPN13-207ENST00000508063 SCN4AP35499 1836 aa14.37□□□□□ -0.11
PTPN13-207ENST00000508063 ANKRD13DQ6ZTN6 518 aa14.37□□□□□ -0.11
PTPN13-207ENST00000508063 L3MBTL3Q96JM7 780 aaPredicted RBP14.37□□□□□ -0.11
PTPN13-207ENST00000508063 TRMT112Q9UI30 125 aaKnown RBP14.37□□□□□ -0.11
PTPN13-207ENST00000508063 SH3TC1Q8TE82 1336 aa14.37□□□□□ -0.11
PTPN13-207ENST00000508063 FZD9O00144 591 aa14.36□□□□□ -0.11
PTPN13-207ENST00000508063 ZNF853P0CG23 659 aa14.36□□□□□ -0.11
PTPN13-207ENST00000508063 CHADLQ6NUI6 762 aa14.36□□□□□ -0.11
PTPN13-207ENST00000508063 KLRG1Q96E93 195 aa14.36□□□□□ -0.11
PTPN13-207ENST00000508063 SNED1Q8TER0 1413 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 BBOX1O75936 387 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 EIF6P56537 245 aaKnown RBP14.35□□□□□ -0.11
PTPN13-207ENST00000508063 C3orf67Q6ZVT6 689 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 DDX46Q7L014 1031 aaKnown RBP14.35□□□□□ -0.11
PTPN13-207ENST00000508063 GPC2Q8N158 579 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 SUPT20HQ8NEM7 779 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 VPS33BQ9H267 617 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 ATP6V0A2Q9Y487 856 aa14.35□□□□□ -0.11
PTPN13-207ENST00000508063 TCERG1O14776 1098 aaKnown RBP14.34□□□□□ -0.11
PTPN13-207ENST00000508063 GOLGA2Q08379 1002 aa14.34□□□□□ -0.11
PTPN13-207ENST00000508063 LDHDQ86WU2 507 aa14.34□□□□□ -0.11
PTPN13-207ENST00000508063 LARGE2Q8N3Y3 721 aa14.34□□□□□ -0.11
PTPN13-207ENST00000508063 TAF1DQ9H5J8 278 aaPredicted RBP14.34□□□□□ -0.11
PTPN13-207ENST00000508063 HACL1Q9UJ83 578 aa14.34□□□□□ -0.11
PTPN13-207ENST00000508063 ABCC4O15439 1325 aa14.34□□□□□ -0.11
PTPN13-207ENST00000508063 ZNF541Q9H0D2 1346 aa14.34□□□□□ -0.11
PTPN13-207ENST00000508063 HCLS1P14317 486 aaPredicted RBP14.33□□□□□ -0.12
PTPN13-207ENST00000508063 HTRA3P83110 453 aa14.33□□□□□ -0.12
PTPN13-207ENST00000508063 TMC4Q7Z404 712 aa14.33□□□□□ -0.12
PTPN13-207ENST00000508063 PNMA8AQ86V59 439 aaPredicted RBP14.33□□□□□ -0.12
PTPN13-207ENST00000508063 ISCA1Q9BUE6 129 aa14.33□□□□□ -0.12
PTPN13-207ENST00000508063 HSP90B1P14625 803 aaKnown RBP14.32□□□□□ -0.12
PTPN13-207ENST00000508063 TRIM28Q13263 835 aaKnown RBP14.32□□□□□ -0.12
PTPN13-207ENST00000508063 GRAPQ13588 217 aa14.32□□□□□ -0.12
PTPN13-207ENST00000508063 RIC3Q7Z5B4 369 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms