RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TREHO43280 583 aa6.9□□□□□ -1.3
HMGB1P28-201ENST00000507778 TYRO3Q06418 890 aa6.9□□□□□ -1.3
HMGB1P28-201ENST00000507778 EHHADHQ08426 723 aa6.9□□□□□ -1.3
HMGB1P28-201ENST00000507778 C8orf34Q49A92 452 aa6.9□□□□□ -1.3
HMGB1P28-201ENST00000507778 RTCBQ9Y3I0 505 aaKnown RBP6.9□□□□□ -1.3
HMGB1P28-201ENST00000507778 EPB42P16452 691 aa6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 EAPPQ56P03 285 aaPredicted RBP6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 ZNF326Q5BKZ1 582 aaKnown RBP6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 SAMD5Q5TGI4 173 aa6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 FIGNL1Q6PIW4 674 aa6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 CMTR1Q8N1G2 835 aaKnown RBP6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 CCDC155Q8N6L0 562 aa6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 ZNF428Q96B54 188 aa6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 ZCCHC2Q9C0B9 1178 aaKnown RBP6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 GGNBP2Q9H3C7 697 aa6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 FNDC3AQ9Y2H6 1198 aaKnown RBP6.89□□□□□ -1.31
HMGB1P28-201ENST00000507778 IGHA2P01877 340 aa6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 DSC3Q14574 896 aa6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 TRIM22Q8IYM9 498 aa6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 ALKBH8Q96BT7 664 aaKnown RBP6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 NIF3L1Q9GZT8 377 aa6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 NUCKS1Q9H1E3 243 aaKnown RBP6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 USP20Q9Y2K6 914 aa6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 PCDHGC4Q9Y5F7 938 aa6.88□□□□□ -1.31
HMGB1P28-201ENST00000507778 GPR182O15218 404 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 ATXN7O15265 892 aaPredicted RBP6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 NEFLP07196 543 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 SNRPBP14678 240 aaKnown RBP6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 ZNF16P17020 682 aaPredicted RBP6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 DBN1Q16643 649 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 FBXO33Q7Z6M2 555 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 GIPC2Q8TF65 315 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 GMCL1Q96IK5 515 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 BRD7Q9NPI1 651 aa6.87□□□□□ -1.31
HMGB1P28-201ENST00000507778 C11orf95C9JLR9 678 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 UBAP1LF5GYI3 381 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 P4HBP07237 508 aaKnown RBP6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 THBS1P07996 1170 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 FAM157BP0CG42 384 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 RANGAP1P46060 587 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 FMR1Q06787 632 aaKnown RBP eCLIP6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 XKR5Q6UX68 686 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 ZNF775Q96BV0 537 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 C11orf16Q9NQ32 467 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 CUEDC1Q9NWM3 386 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 KCNH4Q9UQ05 1017 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 KCNMB2Q9Y691 235 aa6.86□□□□□ -1.31
HMGB1P28-201ENST00000507778 A6NHS1 94 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 POTECB2RU33 542 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 E9PSI1 815 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 KHNYNO15037 678 aaKnown RBP6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 XYLBO75191 536 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 ITGA6P23229 1130 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 MAPK8P45983 427 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 KCNQ4P56696 695 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 UBAP2LQ14157 1087 aaKnown RBP6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 ZNF438Q7Z4V0 828 aa6.85□□□□□ -1.31
HMGB1P28-201ENST00000507778 DCDC2BA2VCK2 349 aa6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 EGFRP00533 1210 aa6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 GRNP28799 593 aaKnown RBP6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 FGD1P98174 961 aa6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 TAGLNQ01995 201 aaKnown RBP6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 TNP2Q05952 138 aa6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 SFSWAPQ12872 951 aaKnown RBP6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 LAMC2Q13753 1193 aa6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 TRIP4Q15650 581 aaPredicted RBP6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 PDE12Q6L8Q7 609 aaKnown RBP6.84□□□□□ -1.31
HMGB1P28-201ENST00000507778 UNCXA6NJT0 531 aa6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 EFSO43281 561 aa6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 BNIP3LO60238 219 aa6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 LDHBP07195 334 aaKnown RBP6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 MAPTP10636 758 aaKnown RBP6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 ATP2B2Q01814 1243 aa6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 BCL11AQ9H165 835 aa6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 ELP3Q9H9T3 547 aa6.83□□□□□ -1.32
HMGB1P28-201ENST00000507778 PPFIA3O75145 1194 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 TNFRSF21O75509 655 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 CCINQ13939 588 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 ENOX2Q16206 610 aaKnown RBP6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 FOXR1Q6PIV2 292 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 NLRP13Q86W25 1043 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 GTPBP3Q969Y2 492 aaKnown RBP6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 ZNF837Q96EG3 531 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 CSRNP1Q96S65 589 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 DNAJC25Q9H1X3 360 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 NDFIP2Q9NV92 336 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 MARK1Q9P0L2 795 aa6.82□□□□□ -1.32
HMGB1P28-201ENST00000507778 PNMA6FA0A0J9YX94 578 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 EIF1AYO14602 144 aaKnown RBP6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 PRPF40AO75400 957 aaKnown RBP6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 ORC1Q13415 861 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 ALG1LQ6GMV1 187 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 SNX29Q8TEQ0 813 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 MRRFQ96E11 262 aaKnown RBP6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 ABHD17AQ96GS6 310 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 CFHR5Q9BXR6 569 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 STRN4Q9NRL3 753 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 TMEM63CQ9P1W3 806 aa6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 ATXN7L1Q9ULK2 861 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P28-201ENST00000507778 PHF24Q9UPV7 400 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms