RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZBTB3Q9H5J0 574 aa27.62■■■□□ 2.01
SQSTM1-210ENST00000506042 FZD9O00144 591 aa27.61■■■□□ 2.01
SQSTM1-210ENST00000506042 GIGYF2Q6Y7W6 1299 aaKnown RBP27.61■■■□□ 2.01
SQSTM1-210ENST00000506042 NUTM1Q86Y26 1132 aa27.61■■■□□ 2.01
SQSTM1-210ENST00000506042 NLRP3Q96P20 1036 aa27.61■■■□□ 2.01
SQSTM1-210ENST00000506042 PLEKHF1Q96S99 279 aa27.61■■■□□ 2.01
SQSTM1-210ENST00000506042 RNF123Q5XPI4 1314 aa27.61■■■□□ 2.01
SQSTM1-210ENST00000506042 GPTP24298 496 aa27.6■■■□□ 2.01
SQSTM1-210ENST00000506042 HOXA10P31260 410 aaPredicted RBP27.6■■■□□ 2.01
SQSTM1-210ENST00000506042 HSP90AB3PQ58FF7 597 aa27.6■■■□□ 2.01
SQSTM1-210ENST00000506042 CRAMP1Q96RY5 1269 aa27.6■■■□□ 2.01
SQSTM1-210ENST00000506042 ZNF541Q9H0D2 1346 aa27.6■■■□□ 2.01
SQSTM1-210ENST00000506042 CNTNAP1P78357 1384 aa27.6■■■□□ 2.01
SQSTM1-210ENST00000506042 LARGE2Q8N3Y3 721 aa27.59■■■□□ 2.01
SQSTM1-210ENST00000506042 PPEF1O14829 653 aaPredicted RBP27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 POTEIP0CG38 1075 aa27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 POTEJP0CG39 1038 aa27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 RALBP1Q15311 655 aa27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 SUPT20HQ8NEM7 779 aa27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 VPS33BQ9H267 617 aa27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 PASKQ96RG2 1323 aa27.58■■■□□ 2.01
SQSTM1-210ENST00000506042 CAPN15O75808 1086 aa27.57■■■□□ 2
SQSTM1-210ENST00000506042 TTLL7Q6ZT98 887 aa27.57■■■□□ 2
SQSTM1-210ENST00000506042 NIM1KQ8IY84 436 aa27.57■■■□□ 2
SQSTM1-210ENST00000506042 ABCC12Q96J65 1359 aa27.57■■■□□ 2
SQSTM1-210ENST00000506042 GJA3Q9Y6H8 435 aa27.56■■■□□ 2
SQSTM1-210ENST00000506042 RIPK4P57078 832 aa27.55■■■□□ 2
SQSTM1-210ENST00000506042 ZNF34Q8IZ26 560 aa27.55■■■□□ 2
SQSTM1-210ENST00000506042 UTP14AQ9BVJ6 771 aaKnown RBP27.55■■■□□ 2
SQSTM1-210ENST00000506042 SUSD4Q5VX71 490 aa27.54■■■□□ 2
SQSTM1-210ENST00000506042 OLFM4Q6UX06 510 aa27.54■■■□□ 2
SQSTM1-210ENST00000506042 CNTROBQ8N137 903 aa27.54■■■□□ 2
SQSTM1-210ENST00000506042 THUMPD2Q9BTF0 503 aaKnown RBP27.54■■■□□ 2
SQSTM1-210ENST00000506042 EIF2S2P20042 333 aaKnown RBP27.53■■■□□ 2
SQSTM1-210ENST00000506042 UBN2Q6ZU65 1347 aa27.52■■■□□ 2
SQSTM1-210ENST00000506042 NTSR2O95665 410 aa27.51■■□□□ 1.99
SQSTM1-210ENST00000506042 ITGBL1O95965 494 aaPredicted RBP27.51■■□□□ 1.99
SQSTM1-210ENST00000506042 CTCFP49711 727 aaPredicted RBP27.51■■□□□ 1.99
SQSTM1-210ENST00000506042 ABT1Q9ULW3 272 aaKnown RBP27.51■■□□□ 1.99
SQSTM1-210ENST00000506042 PPIP5K2O43314 1243 aa27.5■■□□□ 1.99
SQSTM1-210ENST00000506042 DEFB115Q30KQ5 88 aa27.5■■□□□ 1.99
SQSTM1-210ENST00000506042 USP50Q70EL3 339 aaPredicted RBP27.5■■□□□ 1.99
SQSTM1-210ENST00000506042 PRDM10Q9NQV6 1147 aa27.49■■□□□ 1.99
SQSTM1-210ENST00000506042 BBOX1O75936 387 aa27.48■■□□□ 1.99
SQSTM1-210ENST00000506042 MAP2K1Q02750 393 aaPredicted RBP27.48■■□□□ 1.99
SQSTM1-210ENST00000506042 MAP1SQ66K74 1059 aaPredicted RBP27.48■■□□□ 1.99
SQSTM1-210ENST00000506042 ATP6V0A2Q9Y487 856 aa27.48■■□□□ 1.99
SQSTM1-210ENST00000506042 ADAMTSL1Q8N6G6 1762 aa27.48■■□□□ 1.99
SQSTM1-210ENST00000506042 TCERG1O14776 1098 aaKnown RBP27.47■■□□□ 1.99
SQSTM1-210ENST00000506042 ECE1P42892 770 aa27.47■■□□□ 1.99
SQSTM1-210ENST00000506042 SLC10A5Q5PT55 438 aa27.47■■□□□ 1.99
SQSTM1-210ENST00000506042 DDX46Q7L014 1031 aaKnown RBP27.47■■□□□ 1.99
SQSTM1-210ENST00000506042 TMC4Q7Z404 712 aa27.47■■□□□ 1.99
SQSTM1-210ENST00000506042 BEGAINQ9BUH8 593 aa27.47■■□□□ 1.99
SQSTM1-210ENST00000506042 WDR43Q15061 677 aaKnown RBP eCLIP27.46■■□□□ 1.99
SQSTM1-210ENST00000506042 SNED1Q8TER0 1413 aa27.46■■□□□ 1.99
SQSTM1-210ENST00000506042 RASSF10A6NK89 507 aa27.45■■□□□ 1.98
SQSTM1-210ENST00000506042 TMPOP42166 694 aaKnown RBP27.45■■□□□ 1.98
SQSTM1-210ENST00000506042 VEGFBP49765 207 aa27.45■■□□□ 1.98
SQSTM1-210ENST00000506042 DPP8Q6V1X1 898 aaPredicted RBP27.45■■□□□ 1.98
SQSTM1-210ENST00000506042 ANKRD36CQ5JPF3 1778 aa27.45■■□□□ 1.98
SQSTM1-210ENST00000506042 SH3TC1Q8TE82 1336 aa27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 CDHR2Q9BYE9 1310 aa27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 AIMP1Q12904 312 aaKnown RBP27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 TNIP1Q15025 636 aa27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 DDX21Q9NR30 783 aaKnown RBP eCLIP27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 ADARB2Q9NS39 739 aaKnown RBP27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 TRMT112Q9UI30 125 aaKnown RBP27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 ZNRF3Q9ULT6 936 aa27.43■■□□□ 1.98
SQSTM1-210ENST00000506042 FOXN1O15353 648 aa27.42■■□□□ 1.98
SQSTM1-210ENST00000506042 PAXIP1Q6ZW49 1069 aaPredicted RBP27.42■■□□□ 1.98
SQSTM1-210ENST00000506042 COPS6Q7L5N1 327 aa27.42■■□□□ 1.98
SQSTM1-210ENST00000506042 SP8Q8IXZ3 490 aa27.42■■□□□ 1.98
SQSTM1-210ENST00000506042 MPNDQ8N594 471 aa27.42■■□□□ 1.98
SQSTM1-210ENST00000506042 MYBBP1AQ9BQG0 1328 aaKnown RBP27.41■■□□□ 1.98
SQSTM1-210ENST00000506042 ABCC4O15439 1325 aa27.41■■□□□ 1.98
SQSTM1-210ENST00000506042 HOXB7P09629 217 aa27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 HSP90B1P14625 803 aaKnown RBP27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 SCNN1DP51172 638 aa27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 TCIRG1Q13488 830 aa27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 AOC3Q16853 763 aa27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 BCL2L13Q9BXK5 485 aa27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 WDR33Q9C0J8 1336 aaKnown RBP27.4■■□□□ 1.98
SQSTM1-210ENST00000506042 PDIA6Q15084 440 aa27.39■■□□□ 1.98
SQSTM1-210ENST00000506042 NLRP10Q86W26 655 aa27.39■■□□□ 1.98
SQSTM1-210ENST00000506042 XAGE3Q8WTP9 111 aa27.39■■□□□ 1.98
SQSTM1-210ENST00000506042 RTFDC1Q9BY42 306 aaPredicted RBP27.39■■□□□ 1.98
SQSTM1-210ENST00000506042 LAS1LQ9Y4W2 734 aaKnown RBP27.39■■□□□ 1.98
SQSTM1-210ENST00000506042 EPS15P42566 896 aa27.38■■□□□ 1.97
SQSTM1-210ENST00000506042 NEUROD2Q15784 382 aa27.38■■□□□ 1.97
SQSTM1-210ENST00000506042 RUNDC1Q96C34 613 aa27.38■■□□□ 1.97
SQSTM1-210ENST00000506042 CHMP4AQ9BY43 222 aa27.38■■□□□ 1.97
SQSTM1-210ENST00000506042 WBP1LQ9NX94 342 aa27.38■■□□□ 1.97
SQSTM1-210ENST00000506042 GPRC5DQ9NZD1 345 aa27.38■■□□□ 1.97
SQSTM1-210ENST00000506042 GRAPQ13588 217 aa27.37■■□□□ 1.97
SQSTM1-210ENST00000506042 CIAPIN1Q6FI81 312 aa27.37■■□□□ 1.97
SQSTM1-210ENST00000506042 GRAPLQ8TC17 118 aaPredicted RBP27.37■■□□□ 1.97
SQSTM1-210ENST00000506042 NECTIN2Q92692 538 aa27.37■■□□□ 1.97
SQSTM1-210ENST00000506042 DBF4Q9UBU7 674 aaPredicted RBP27.37■■□□□ 1.97
SQSTM1-210ENST00000506042 HDGFL1Q5TGJ6 251 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms