RNA–Protein interactions for RNA: ENST00000503547.1

NR1I3-218, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 535 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-218	ENST00000503547	TCERG1	O14776	1098 aa	Known RBP	11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	ITGBL1	O95965	494 aa	Predicted RBP	11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	GPT	P24298	496 aa		11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	LMOD1	P29536	600 aa	Predicted RBP	11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	CTCF	P49711	727 aa	Predicted RBP	11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	CNTROB	Q8N137	903 aa		11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	PNISR	Q8TF01	805 aa	Known RBP	11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	ZBTB3	Q9H5J0	574 aa		11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	ABT1	Q9ULW3	272 aa	Known RBP	11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	MAP3K15	Q6ZN16	1313 aa		11.78	□□□□□ -0.52
NR1I3-218	ENST00000503547	TAF1	P21675	1872 aa		11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	ERVV-1	B6SEH8	477 aa		11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	FZD9	O00144	591 aa		11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	LARGE2	Q8N3Y3	721 aa		11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	PSMD1	Q99460	953 aa		11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	TMX4	Q9H1E5	349 aa	Predicted RBP	11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	COL4A5	P29400	1685 aa		11.77	□□□□□ -0.53
NR1I3-218	ENST00000503547	PPEF1	O14829	653 aa	Predicted RBP	11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	DEFB115	Q30KQ5	88 aa		11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	CRY2	Q49AN0	593 aa		11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	CC2D2B	Q6DHV5	1058 aa		11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	TTLL7	Q6ZT98	887 aa		11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	RBM17	Q96I25	401 aa	Known RBP	11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	THUMPD2	Q9BTF0	503 aa	Known RBP	11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	PRDM10	Q9NQV6	1147 aa		11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	MAPK8IP3	Q9UPT6	1336 aa		11.76	□□□□□ -0.53
NR1I3-218	ENST00000503547	LBX1	P52954	281 aa		11.75	□□□□□ -0.53
NR1I3-218	ENST00000503547	GRM1	Q13255	1194 aa		11.75	□□□□□ -0.53
NR1I3-218	ENST00000503547	PPP4R3CP	Q6ZMV5	832 aa		11.75	□□□□□ -0.53
NR1I3-218	ENST00000503547	UBN2	Q6ZU65	1347 aa		11.75	□□□□□ -0.53
NR1I3-218	ENST00000503547	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.75	□□□□□ -0.53
NR1I3-218	ENST00000503547	SNED1	Q8TER0	1413 aa		11.75	□□□□□ -0.53
NR1I3-218	ENST00000503547	EIF4A1	P60842	406 aa	Known RBP	11.74	□□□□□ -0.53
NR1I3-218	ENST00000503547	GRIPAP1	Q4V328	841 aa		11.74	□□□□□ -0.53
NR1I3-218	ENST00000503547	SUSD4	Q5VX71	490 aa		11.74	□□□□□ -0.53
NR1I3-218	ENST00000503547	NIM1K	Q8IY84	436 aa		11.74	□□□□□ -0.53
NR1I3-218	ENST00000503547	RIC1	Q4ADV7	1423 aa		11.74	□□□□□ -0.53
NR1I3-218	ENST00000503547	RASSF10	A6NK89	507 aa		11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	PPIP5K2	O43314	1243 aa		11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	POLR2A	P24928	1970 aa	Known RBP	11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	HOXA10	P31260	410 aa	Predicted RBP	11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	MAP2K1	Q02750	393 aa	Predicted RBP	11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	NFE2L2	Q16236	605 aa		11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	PPP1R42	Q7Z4L9	355 aa		11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	THSD7B	Q9C0I4	1608 aa		11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	WDR33	Q9C0J8	1336 aa	Known RBP	11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	WBP1L	Q9NX94	342 aa		11.73	□□□□□ -0.53
NR1I3-218	ENST00000503547	CASP8AP2	Q9UKL3	1982 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	NTSR2	O95665	410 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	EIF2S2	P20042	333 aa	Known RBP	11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	EPS15	P42566	896 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	SCNN1D	P51172	638 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	AOC3	Q16853	763 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	SLC51A	Q86UW1	340 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	NLRP3	Q96P20	1036 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	CRAMP1	Q96RY5	1269 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	BEGAIN	Q9BUH8	593 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	PNN	Q9H307	717 aa	Known RBP	11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	TSPYL4	Q9UJ04	414 aa		11.72	□□□□□ -0.53
NR1I3-218	ENST00000503547	ERBB4	Q15303	1308 aa		11.71	□□□□□ -0.53
NR1I3-218	ENST00000503547	HSPA8	P11142	646 aa	Known RBP	11.71	□□□□□ -0.53
NR1I3-218	ENST00000503547	PARP10	Q53GL7	1025 aa		11.71	□□□□□ -0.53
NR1I3-218	ENST00000503547	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.71	□□□□□ -0.53
NR1I3-218	ENST00000503547	ZNF34	Q8IZ26	560 aa		11.71	□□□□□ -0.53
NR1I3-218	ENST00000503547	UTP14A	Q9BVJ6	771 aa	Known RBP	11.71	□□□□□ -0.53
NR1I3-218	ENST00000503547	DDX60	Q8IY21	1712 aa	Known RBP	11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	TRAF5	O00463	557 aa		11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	ECE1	P42892	770 aa		11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	FMR1	Q06787	632 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	C3orf67	Q6ZVT6	689 aa		11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	USP50	Q70EL3	339 aa	Predicted RBP	11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	CAPNS2	Q96L46	248 aa		11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	PLEKHF1	Q96S99	279 aa		11.7	□□□□□ -0.54
NR1I3-218	ENST00000503547	ABCC4	O15439	1325 aa		11.69	□□□□□ -0.54
NR1I3-218	ENST00000503547	CYP4F22	Q6NT55	531 aa		11.69	□□□□□ -0.54
NR1I3-218	ENST00000503547	SUPT20H	Q8NEM7	779 aa		11.69	□□□□□ -0.54
NR1I3-218	ENST00000503547	NECTIN2	Q92692	538 aa		11.69	□□□□□ -0.54
NR1I3-218	ENST00000503547	ADARB2	Q9NS39	739 aa	Known RBP	11.69	□□□□□ -0.54
NR1I3-218	ENST00000503547	ATP6V0A2	Q9Y487	856 aa		11.69	□□□□□ -0.54
NR1I3-218	ENST00000503547	ANXA1	P04083	346 aa		11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	AIMP1	Q12904	312 aa	Known RBP	11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	DPP8	Q6V1X1	898 aa	Predicted RBP	11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	GPR101	Q96P66	508 aa	Predicted RBP	11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	BCL2L13	Q9BXK5	485 aa		11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	GPRC5D	Q9NZD1	345 aa		11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	ZNRF3	Q9ULT6	936 aa		11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	LRRC37A	A6NMS7	1700 aa		11.68	□□□□□ -0.54
NR1I3-218	ENST00000503547	AKAP11	Q9UKA4	1901 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	CELF2	O95319	508 aa	Known RBP	11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	GMPS	P49915	693 aa	Predicted RBP	11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	RIPK4	P57078	832 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	CXCL9	Q07325	125 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	PROSER3	Q2NL68	480 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	HSP90AB3P	Q58FF7	597 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	MPND	Q8N594	471 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	ABHD8	Q96I13	439 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	ZNF408	Q9H9D4	720 aa		11.67	□□□□□ -0.54
NR1I3-218	ENST00000503547	RAD17	O75943	681 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms