RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CHRNA2Q15822 529 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 MPNDQ8N594 471 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 ZCRB1Q8TBF4 217 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 C19orf44Q9H6X5 657 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 RAI14Q9P0K7 980 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 TRMT112Q9UI30 125 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 CEP131Q9UPN4 1083 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 RAD21O60216 631 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 NMIQ13287 307 aaPredicted RBP12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 SMARCE1Q969G3 411 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 PA2G4Q9UQ80 394 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 IQGAP1P46940 1657 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 F13A1P00488 732 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 MCMDC2Q4G0Z9 681 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 USP48Q86UV5 1035 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 DCAF5Q96JK2 942 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 DDX21Q9NR30 783 aaKnown RBP eCLIP12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 RTL1A6NKG5 1358 aa12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 CWF19L2Q2TBE0 894 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 ZGPATQ8N5A5 531 aaKnown RBP12.6□□□□□ -0.39
LIMCH1-205ENST00000503057 USP25Q9UHP3 1055 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 NLRP1Q9C000 1473 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 EPB41L2O43491 1005 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 IL15P40933 162 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 TEX35Q5T0J7 233 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 NAPBQ9H115 298 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 ZFYP08048 801 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 AK2P54819 239 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 CCDC112Q8NEF3 446 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 MED14O60244 1454 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 GOLGA8BA8MQT2 603 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 ANO8Q9HCE9 1232 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 CNPY2Q9Y2B0 182 aa12.59□□□□□ -0.39
LIMCH1-205ENST00000503057 CCDC196A0A1B0GTZ2 297 aa12.58□□□□□ -0.39
LIMCH1-205ENST00000503057 CAVIN2O95810 425 aa12.58□□□□□ -0.39
LIMCH1-205ENST00000503057 LTKP29376 864 aa12.58□□□□□ -0.39
LIMCH1-205ENST00000503057 ZNF771Q7L3S4 317 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 STK11IPQ8N1F8 1099 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 NFATC2IPQ8NCF5 419 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 ALKQ9UM73 1620 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 BICC1Q9H694 974 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 USP6P35125 1406 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 TSPOAP1O95153 1857 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 RRP9O43818 475 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 CLCN1P35523 988 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 DDX46Q7L014 1031 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 ZNF853P0CG23 659 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 CCT2P78371 535 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 RBM10P98175 930 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 RUFY3Q7L099 469 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 NECAB1Q8N987 351 aa12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 JARID2Q92833 1246 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-205ENST00000503057 CREB3L3Q68CJ9 461 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 NCOA7Q8NI08 942 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 PANK2Q9BZ23 570 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 ADCY5O95622 1261 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 LMBR1LQ6UX01 489 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 GSPT1P15170 499 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 CAVIN4Q5BKX8 364 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 LDHAL6AQ6ZMR3 332 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 MAGEC2Q9UBF1 373 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 SSH2Q76I76 1423 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 PNMA6EA0A0J9YXQ4 647 aa12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 RNF41Q9H4P4 317 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-205ENST00000503057 STX1AQ16623 288 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 CKAP2LQ8IYA6 745 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 MTMR7Q9Y216 660 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 SLC12A7Q9Y666 1083 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 PTCH1Q13635 1447 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 EXOC5O00471 708 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 TFIP11Q9UBB9 837 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 UQCRFS1P1P0C7P4 283 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 EIF4A1P60842 406 aaKnown RBP12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 GUCY1B3Q02153 619 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 BRF1Q92994 677 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 CCDC171Q6TFL3 1326 aa12.56□□□□□ -0.4
LIMCH1-205ENST00000503057 NUTM2BA6NNL0 878 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 NUTM2EB1AL46 878 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 NUTM2AQ8IVF1 878 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 ROBO2Q9HCK4 1378 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 GPTP24298 496 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 SSRP1Q08945 709 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 ZNF790Q6PG37 636 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 PPFIBP1Q86W92 1011 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 FSIP1Q8NA03 581 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 PHF23Q9BUL5 403 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 LGR6Q9HBX8 967 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 PAG1Q9NWQ8 432 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 PCDH11XQ9BZA7 1347 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 PCDH11YQ9BZA8 1340 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 FILIP1Q7Z7B0 1213 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 CLIP2Q9UDT6 1046 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 ABCF2Q9UG63 623 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 A2ML1A8K2U0 1454 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 GOLGA8AA7E2F4 631 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 HS1BP3Q53T59 392 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 CCAR1Q8IX12 1150 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 ACBD3Q9H3P7 528 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 KIF2AO00139 706 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 NEMFO60524 1076 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms