RNA–Protein interactions for RNA: ENST00000496172.5

ERGIC3-219, Transcript of ERGIC and golgi 3, human

TSL 2

Gene ERGIC3, Length 781 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERGIC3-219	ENST00000496172	EIF2S2	P20042	333 aa	Known RBP	13.66	□□□□□ -0.22
ERGIC3-219	ENST00000496172	CALD1	Q05682	793 aa	Known RBP	13.66	□□□□□ -0.22
ERGIC3-219	ENST00000496172	TPTE2	Q6XPS3	522 aa		13.66	□□□□□ -0.22
ERGIC3-219	ENST00000496172	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
ERGIC3-219	ENST00000496172	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
ERGIC3-219	ENST00000496172	BCOR	Q6W2J9	1755 aa		13.66	□□□□□ -0.22
ERGIC3-219	ENST00000496172	ERVV-1	B6SEH8	477 aa		13.65	□□□□□ -0.22
ERGIC3-219	ENST00000496172	APAF1	O14727	1248 aa		13.65	□□□□□ -0.22
ERGIC3-219	ENST00000496172	STYK1	Q6J9G0	422 aa		13.65	□□□□□ -0.22
ERGIC3-219	ENST00000496172	PNMA8A	Q86V59	439 aa	Predicted RBP	13.65	□□□□□ -0.22
ERGIC3-219	ENST00000496172	CNKSR1	Q969H4	720 aa		13.65	□□□□□ -0.22
ERGIC3-219	ENST00000496172	MAP3K15	Q6ZN16	1313 aa		13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	TRPM7	Q96QT4	1865 aa		13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	GTF2E1	P29083	439 aa	Predicted RBP	13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	HLF	Q16534	295 aa		13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CCDC24	Q8N4L8	307 aa		13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CFAP44	Q96MT7	982 aa		13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	HACL1	Q9UJ83	578 aa		13.64	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CCDC85C	A6NKD9	419 aa		13.63	□□□□□ -0.23
ERGIC3-219	ENST00000496172	SRGN	P10124	158 aa		13.63	□□□□□ -0.23
ERGIC3-219	ENST00000496172	EPHX2	P34913	555 aa		13.63	□□□□□ -0.23
ERGIC3-219	ENST00000496172	PRPF40B	Q6NWY9	871 aa	Known RBP	13.63	□□□□□ -0.23
ERGIC3-219	ENST00000496172	FAM177B	A6PVY3	158 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	TTLL7	Q6ZT98	887 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CNTROB	Q8N137	903 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	C7orf43	Q8WVR3	580 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	NYX	Q9GZU5	481 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	ZBTB3	Q9H5J0	574 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	MRS2	Q9HD23	443 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	ZNF541	Q9H0D2	1346 aa		13.62	□□□□□ -0.23
ERGIC3-219	ENST00000496172	HOXB7	P09629	217 aa		13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	ECE1	P42892	770 aa		13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	GNAI1	P63096	354 aa		13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	EAPP	Q56P03	285 aa	Predicted RBP	13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	NECTIN2	Q92692	538 aa		13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	MASTL	Q96GX5	879 aa		13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	IFT57	Q9NWB7	429 aa		13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.61	□□□□□ -0.23
ERGIC3-219	ENST00000496172	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
ERGIC3-219	ENST00000496172	PDIA6	Q15084	440 aa		13.6	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CCDC184	Q52MB2	194 aa		13.6	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CCDC93	Q567U6	631 aa		13.6	□□□□□ -0.23
ERGIC3-219	ENST00000496172	BEGAIN	Q9BUH8	593 aa		13.6	□□□□□ -0.23
ERGIC3-219	ENST00000496172	SNED1	Q8TER0	1413 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	FZD9	O00144	591 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CA12	O43570	354 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	HDGFL1	Q5TGJ6	251 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	MAP1S	Q66K74	1059 aa	Predicted RBP	13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	PPP1R42	Q7Z4L9	355 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	CAPNS2	Q96L46	248 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	MBIP	Q9NS73	344 aa		13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	ABT1	Q9ULW3	272 aa	Known RBP	13.59	□□□□□ -0.23
ERGIC3-219	ENST00000496172	ANXA1	P04083	346 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	NPR1	P16066	1061 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	GPT	P24298	496 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	MAP2K2	P36507	400 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	AIMP1	Q12904	312 aa	Known RBP	13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	KRT24	Q2M2I5	525 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	PROSER3	Q2NL68	480 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	PARP10	Q53GL7	1025 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	HSP90AB3P	Q58FF7	597 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	DUSP27	Q5VZP5	1158 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	COPS6	Q7L5N1	327 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	GPC2	Q8N158	579 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	CHMP4A	Q9BY43	222 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	CLEC11A	Q9Y240	323 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	RNF123	Q5XPI4	1314 aa		13.58	□□□□□ -0.24
ERGIC3-219	ENST00000496172	ZNF853	P0CG23	659 aa		13.57	□□□□□ -0.24
ERGIC3-219	ENST00000496172	LRP10	Q7Z4F1	713 aa		13.57	□□□□□ -0.24
ERGIC3-219	ENST00000496172	ZNF34	Q8IZ26	560 aa		13.57	□□□□□ -0.24
ERGIC3-219	ENST00000496172	XAGE3	Q8WTP9	111 aa		13.57	□□□□□ -0.24
ERGIC3-219	ENST00000496172	CHPF2	Q9P2E5	772 aa		13.57	□□□□□ -0.24
ERGIC3-219	ENST00000496172	DBF4	Q9UBU7	674 aa	Predicted RBP	13.57	□□□□□ -0.24
ERGIC3-219	ENST00000496172	CASP8AP2	Q9UKL3	1982 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	KLRG2	A4D1S0	409 aa	Predicted RBP	13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	ALDH1B1	P30837	517 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	CCDC27	Q2M243	656 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	SUSD4	Q5VX71	490 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	NUTM1	Q86Y26	1132 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	GPR101	Q96P66	508 aa	Predicted RBP	13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	MCOLN1	Q9GZU1	580 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	HYPK	Q9NX55	129 aa		13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.56	□□□□□ -0.24
ERGIC3-219	ENST00000496172	NUP98	P52948	1817 aa		13.55	□□□□□ -0.24
ERGIC3-219	ENST00000496172	RTKN2	Q8IZC4	609 aa		13.55	□□□□□ -0.24
ERGIC3-219	ENST00000496172	RPGR	Q92834	1020 aa	Known RBP	13.55	□□□□□ -0.24
ERGIC3-219	ENST00000496172	UTP14A	Q9BVJ6	771 aa	Known RBP	13.55	□□□□□ -0.24
ERGIC3-219	ENST00000496172	TLL2	Q9Y6L7	1015 aa		13.55	□□□□□ -0.24
ERGIC3-219	ENST00000496172	UBN2	Q6ZU65	1347 aa		13.55	□□□□□ -0.24
ERGIC3-219	ENST00000496172	IARS	P41252	1262 aa	Known RBP	13.54	□□□□□ -0.24
ERGIC3-219	ENST00000496172	TCIRG1	Q13488	830 aa		13.54	□□□□□ -0.24
ERGIC3-219	ENST00000496172	NCBP3	Q53F19	620 aa	Known RBP	13.54	□□□□□ -0.24
ERGIC3-219	ENST00000496172	CYP4F22	Q6NT55	531 aa		13.54	□□□□□ -0.24
ERGIC3-219	ENST00000496172	HHIPL1	Q96JK4	782 aa		13.54	□□□□□ -0.24
ERGIC3-219	ENST00000496172	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.54	□□□□□ -0.24
ERGIC3-219	ENST00000496172	ELL2	O00472	640 aa	Predicted RBP	13.53	□□□□□ -0.24
ERGIC3-219	ENST00000496172	NTSR2	O95665	410 aa		13.53	□□□□□ -0.24
ERGIC3-219	ENST00000496172	BRPF1	P55201	1214 aa	Predicted RBP	13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms