RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-222ENST00000495981 WAPLQ7Z5K2 1190 aa6.34□□□□□ -1.39
VPS52-222ENST00000495981 DNAJC5GQ8N7S2 189 aa6.34□□□□□ -1.39
VPS52-222ENST00000495981 NRKQ7Z2Y5 1582 aa6.34□□□□□ -1.39
VPS52-222ENST00000495981 TNS1Q9HBL0 1735 aaKnown RBP6.33□□□□□ -1.4
VPS52-222ENST00000495981 PARD3Q8TEW0 1356 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 ITGAEP38570 1179 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 CLDN10P78369 228 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 KCNH2Q12809 1159 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 ANKMY2Q8IV38 441 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 PLPP7Q8NBV4 271 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 CDCA7Q9BWT1 371 aaPredicted RBP6.33□□□□□ -1.4
VPS52-222ENST00000495981 DLC1Q96QB1 1528 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 ARHGEF28Q8N1W1 1705 aaKnown RBP6.33□□□□□ -1.4
VPS52-222ENST00000495981 CCDC144AA2RUR9 1427 aa6.33□□□□□ -1.4
VPS52-222ENST00000495981 LRPPRCP42704 1394 aaKnown RBP6.32□□□□□ -1.4
VPS52-222ENST00000495981 PHRF1Q9P1Y6 1649 aaKnown RBP6.32□□□□□ -1.4
VPS52-222ENST00000495981 PLEKHH1Q9ULM0 1364 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 SPATA31A1Q5TZJ5 1347 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 ATP5J2-PTCD1G3V325 749 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 RASA1P20936 1047 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 SCUBE3Q8IX30 993 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 FAM200AQ8TCP9 573 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 GPSM3Q9Y4H4 160 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 THSD7AQ9UPZ6 1657 aa6.32□□□□□ -1.4
VPS52-222ENST00000495981 ZNF16P17020 682 aaPredicted RBP6.31□□□□□ -1.4
VPS52-222ENST00000495981 ATP2B4P23634 1241 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 APLP1P51693 650 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 PRELPP51888 382 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 DPYDQ12882 1025 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 ZNF326Q5BKZ1 582 aaKnown RBP6.31□□□□□ -1.4
VPS52-222ENST00000495981 PDXDC2PQ6P474 469 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 LARP1Q6PKG0 1096 aaKnown RBP6.31□□□□□ -1.4
VPS52-222ENST00000495981 RNF135Q8IUD6 432 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 NBPF3Q9H094 633 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 KIAA1024Q9UPX6 916 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 TNS3Q68CZ2 1445 aa6.31□□□□□ -1.4
VPS52-222ENST00000495981 YTHDC2Q9H6S0 1430 aaKnown RBP6.31□□□□□ -1.4
VPS52-222ENST00000495981 ITSN1Q15811 1721 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 SHANK3Q9BYB0 1731 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 ADGRF5Q8IZF2 1346 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 MYOM1P52179 1685 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 ZBTB7BO15156 539 aaPredicted RBP6.3□□□□□ -1.4
VPS52-222ENST00000495981 DXOO77932 396 aaKnown RBP6.3□□□□□ -1.4
VPS52-222ENST00000495981 GPR162Q16538 588 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 OCLNQ16625 522 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 SWI5Q1ZZU3 235 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 SLFNL1Q499Z3 407 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 PPARGC1BQ86YN6 1023 aaKnown RBP6.3□□□□□ -1.4
VPS52-222ENST00000495981 OGFOD1Q8N543 542 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 FAM160A2Q8N612 972 aaPredicted RBP6.3□□□□□ -1.4
VPS52-222ENST00000495981 C1orf216Q8TAB5 229 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 LRCH3Q96II8 777 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 EVA1BQ9NVM1 165 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 NUP188Q5SRE5 1749 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 ABCC11Q96J66 1382 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 ANKRD30BQ9BXX2 1392 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 TULP4Q9NRJ4 1543 aa6.3□□□□□ -1.4
VPS52-222ENST00000495981 RPGRIP1LQ68CZ1 1315 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 TK2O00142 265 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 LZTS3O60299 673 aaPredicted RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 FMNL1O95466 1100 aaPredicted RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 CCNYL3P0C7X3 344 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 RGPD1P0DJD0 1748 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 YBX3P16989 372 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS52-222ENST00000495981 ERCC3P19447 782 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 CTHP32929 405 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 CHRNA2Q15822 529 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 ADGRD1Q6QNK2 874 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 ANKARQ7Z5J8 1434 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 NPAS4Q8IUM7 802 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 SPNS2Q8IVW8 549 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 NLGN2Q8NFZ4 835 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 MRRFQ96E11 262 aaKnown RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 ZNF594Q96JF6 807 aaPredicted RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 CCDC85AQ96PX6 553 aaPredicted RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 USP35Q9P2H5 1018 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 PCDHB9Q9Y5E1 797 aa6.29□□□□□ -1.4
VPS52-222ENST00000495981 COL14A1Q05707 1796 aaKnown RBP6.29□□□□□ -1.4
VPS52-222ENST00000495981 HTRA3P83110 453 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 PTK2Q05397 1052 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 ECM1Q16610 540 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 MAP7D1Q3KQU3 841 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 MSS51Q4VC12 460 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 TAS1R3Q7RTX0 852 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 ADAM32Q8TC27 787 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 ZNF526Q8TF50 670 aaPredicted RBP6.28□□□□□ -1.4
VPS52-222ENST00000495981 GPKOWQ92917 476 aaPredicted RBP eCLIP6.28□□□□□ -1.4
VPS52-222ENST00000495981 SIRT1Q96EB6 747 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 PRDM9Q9NQV7 894 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 STK26Q9P289 416 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 RREB1Q92766 1687 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 ATP7BP35670 1465 aa6.28□□□□□ -1.4
VPS52-222ENST00000495981 WNK3Q9BYP7 1800 aa6.27□□□□□ -1.41
VPS52-222ENST00000495981 LMO7Q8WWI1 1683 aa6.27□□□□□ -1.41
VPS52-222ENST00000495981 ATP10DQ9P241 1426 aa6.27□□□□□ -1.41
VPS52-222ENST00000495981 HRO43593 1189 aa6.27□□□□□ -1.41
VPS52-222ENST00000495981 MMP16P51512 607 aa6.27□□□□□ -1.41
VPS52-222ENST00000495981 MARSP56192 900 aaKnown RBP6.27□□□□□ -1.41
VPS52-222ENST00000495981 MCCD1P59942 119 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 209.2 ms