RNA–Protein interactions for RNA: ENST00000495680.2

SHROOM1-206, Transcript of shroom family member 1, humanhuman

TSL 3

Gene SHROOM1, Length 281 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-206ENST00000495680 PROSER3Q2NL68 480 aa15.92■□□□□ 0.14
SHROOM1-206ENST00000495680 ZNF34Q8IZ26 560 aa15.92■□□□□ 0.14
SHROOM1-206ENST00000495680 HACL1Q9UJ83 578 aa15.92■□□□□ 0.14
SHROOM1-206ENST00000495680 MAPK8IP3Q9UPT6 1336 aa15.92■□□□□ 0.14
SHROOM1-206ENST00000495680 LTBP1Q14766 1721 aa15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 IBTKQ9P2D0 1353 aaPredicted RBP15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 TCERG1O14776 1098 aaKnown RBP15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 NTSR2O95665 410 aa15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 HOXA10P31260 410 aaPredicted RBP15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 EPHX2P34913 555 aa15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 PDIA6Q15084 440 aa15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 PSMD1Q99460 953 aa15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 RIC1Q4ADV7 1423 aa15.91■□□□□ 0.14
SHROOM1-206ENST00000495680 CNTNAP1P78357 1384 aa15.9■□□□□ 0.14
SHROOM1-206ENST00000495680 RPGRQ92834 1020 aaKnown RBP15.9■□□□□ 0.14
SHROOM1-206ENST00000495680 TSPYL4Q9UJ04 414 aa15.9■□□□□ 0.14
SHROOM1-206ENST00000495680 CLEC11AQ9Y240 323 aa15.9■□□□□ 0.14
SHROOM1-206ENST00000495680 EIF2S2P20042 333 aaKnown RBP15.89■□□□□ 0.13
SHROOM1-206ENST00000495680 MAP1SQ66K74 1059 aaPredicted RBP15.89■□□□□ 0.13
SHROOM1-206ENST00000495680 GIGYF2Q6Y7W6 1299 aaKnown RBP15.89■□□□□ 0.13
SHROOM1-206ENST00000495680 RIPK4P57078 832 aa15.88■□□□□ 0.13
SHROOM1-206ENST00000495680 GPC2Q8N158 579 aa15.88■□□□□ 0.13
SHROOM1-206ENST00000495680 GJA3Q9Y6H8 435 aa15.88■□□□□ 0.13
SHROOM1-206ENST00000495680 ERBB4Q15303 1308 aa15.88■□□□□ 0.13
SHROOM1-206ENST00000495680 TMEM88BA6NKF7 163 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 PPEF1O14829 653 aaPredicted RBP15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 VEGFBP49765 207 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 CC2D2BQ6DHV5 1058 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 CNTROBQ8N137 903 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 JDP2Q8WYK2 163 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 NECTIN2Q92692 538 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 CRAMP1Q96RY5 1269 aa15.87■□□□□ 0.13
SHROOM1-206ENST00000495680 FOXN1O15353 648 aa15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 TMPOP42166 694 aaKnown RBP15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 SCNN1DP51172 638 aa15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 FMR1Q06787 632 aaKnown RBP eCLIP15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 KRT24Q2M2I5 525 aa15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 LARGE2Q8N3Y3 721 aa15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 ZNF428Q96B54 188 aa15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 RBM17Q96I25 401 aaKnown RBP15.86■□□□□ 0.13
SHROOM1-206ENST00000495680 LAMB2P55268 1798 aa15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 EPS15P42566 896 aa15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 EIF6P56537 245 aaKnown RBP15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 PNMA8AQ86V59 439 aaPredicted RBP15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 CCDC146Q8IYE0 955 aa15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 PNNQ9H307 717 aaKnown RBP15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 ANKRD36CQ5JPF3 1778 aa15.85■□□□□ 0.13
SHROOM1-206ENST00000495680 PARP10Q53GL7 1025 aa15.84■□□□□ 0.13
SHROOM1-206ENST00000495680 SLC10A5Q5PT55 438 aa15.84■□□□□ 0.13
SHROOM1-206ENST00000495680 COPS6Q7L5N1 327 aa15.84■□□□□ 0.13
SHROOM1-206ENST00000495680 PPP1R42Q7Z4L9 355 aa15.84■□□□□ 0.13
SHROOM1-206ENST00000495680 UTP14AQ9BVJ6 771 aaKnown RBP15.84■□□□□ 0.13
SHROOM1-206ENST00000495680 ABCC4O15439 1325 aa15.84■□□□□ 0.13
SHROOM1-206ENST00000495680 TAF1P21675 1872 aa15.83■□□□□ 0.12
SHROOM1-206ENST00000495680 AIMP1Q12904 312 aaKnown RBP15.83■□□□□ 0.12
SHROOM1-206ENST00000495680 AOC3Q16853 763 aa15.83■□□□□ 0.12
SHROOM1-206ENST00000495680 XAGE3Q8WTP9 111 aa15.83■□□□□ 0.12
SHROOM1-206ENST00000495680 NLRP3Q96P20 1036 aa15.83■□□□□ 0.12
SHROOM1-206ENST00000495680 ATP6V0A2Q9Y487 856 aa15.83■□□□□ 0.12
SHROOM1-206ENST00000495680 PPIP5K2O43314 1243 aa15.82■□□□□ 0.12
SHROOM1-206ENST00000495680 HCLS1P14317 486 aaPredicted RBP15.82■□□□□ 0.12
SHROOM1-206ENST00000495680 NEUROD2Q15784 382 aa15.82■□□□□ 0.12
SHROOM1-206ENST00000495680 NLRP10Q86W26 655 aa15.82■□□□□ 0.12
SHROOM1-206ENST00000495680 RASSF10A6NK89 507 aa15.81■□□□□ 0.12
SHROOM1-206ENST00000495680 RALBP1Q15311 655 aa15.81■□□□□ 0.12
SHROOM1-206ENST00000495680 NIM1KQ8IY84 436 aa15.81■□□□□ 0.12
SHROOM1-206ENST00000495680 BABAM1Q9NWV8 329 aa15.81■□□□□ 0.12
SHROOM1-206ENST00000495680 TRAF5O00463 557 aa15.8■□□□□ 0.12
SHROOM1-206ENST00000495680 LMOD1P29536 600 aaPredicted RBP15.8■□□□□ 0.12
SHROOM1-206ENST00000495680 GRIPAP1Q4V328 841 aa15.8■□□□□ 0.12
SHROOM1-206ENST00000495680 DDX21Q9NR30 783 aaKnown RBP eCLIP15.8■□□□□ 0.12
SHROOM1-206ENST00000495680 TRIM35Q9UPQ4 493 aa15.8■□□□□ 0.12
SHROOM1-206ENST00000495680 COL4A1P02462 1669 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 CHL1O00533 1208 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 CXCL9Q07325 125 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 DDX10Q13206 875 aaKnown RBP15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 TCIRG1Q13488 830 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 DEFB115Q30KQ5 88 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 RTFDC1Q9BY42 306 aaPredicted RBP15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 WBP1LQ9NX94 342 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 CHPF2Q9P2E5 772 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 ABT1Q9ULW3 272 aaKnown RBP15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 DUOX1Q9NRD9 1551 aa15.79■□□□□ 0.12
SHROOM1-206ENST00000495680 LMOD3Q0VAK6 560 aa15.78■□□□□ 0.12
SHROOM1-206ENST00000495680 GPRC5DQ9NZD1 345 aa15.78■□□□□ 0.12
SHROOM1-206ENST00000495680 TRMT112Q9UI30 125 aaKnown RBP15.78■□□□□ 0.12
SHROOM1-206ENST00000495680 LAS1LQ9Y4W2 734 aaKnown RBP15.78■□□□□ 0.12
SHROOM1-206ENST00000495680 DDX60Q8IY21 1712 aaKnown RBP15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 MYBBP1AQ9BQG0 1328 aaKnown RBP15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 WDR33Q9C0J8 1336 aaKnown RBP15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 LBX1P52954 281 aa15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 HSP90AB3PQ58FF7 597 aa15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 CST9Q5W186 159 aa15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 DPP8Q6V1X1 898 aaPredicted RBP15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 SP8Q8IXZ3 490 aa15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 PRDM10Q9NQV6 1147 aa15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 ZNRF3Q9ULT6 936 aa15.77■□□□□ 0.12
SHROOM1-206ENST00000495680 TRPM7Q96QT4 1865 aa15.76■□□□□ 0.11
SHROOM1-206ENST00000495680 SH3TC1Q8TE82 1336 aa15.76■□□□□ 0.11
SHROOM1-206ENST00000495680 SHTN1A0MZ66 631 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms