RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 BRIP1Q9BX63 1249 aa21.7■■□□□ 1.06
HDAC6-235ENST00000495515 TGFB2P61812 414 aa21.69■■□□□ 1.06
HDAC6-235ENST00000495515 FRAT1Q92837 279 aaPredicted RBP21.69■■□□□ 1.06
HDAC6-235ENST00000495515 PDZRN3Q9UPQ7 1066 aa21.69■■□□□ 1.06
HDAC6-235ENST00000495515 SH3TC1Q8TE82 1336 aa21.69■■□□□ 1.06
HDAC6-235ENST00000495515 ARFGEF2Q9Y6D5 1785 aa21.69■■□□□ 1.06
HDAC6-235ENST00000495515 NEURL1BA8MQ27 555 aa21.68■■□□□ 1.06
HDAC6-235ENST00000495515 IGKV5-2P06315 115 aa21.68■■□□□ 1.06
HDAC6-235ENST00000495515 HSP90B1P14625 803 aaKnown RBP21.68■■□□□ 1.06
HDAC6-235ENST00000495515 PDE6BP35913 854 aa21.68■■□□□ 1.06
HDAC6-235ENST00000495515 SYT17Q9BSW7 474 aa21.68■■□□□ 1.06
HDAC6-235ENST00000495515 DCAF8L1A6NGE4 600 aa21.67■■□□□ 1.06
HDAC6-235ENST00000495515 CWF19L2Q2TBE0 894 aaKnown RBP21.67■■□□□ 1.06
HDAC6-235ENST00000495515 BEND3Q5T5X7 828 aa21.67■■□□□ 1.06
HDAC6-235ENST00000495515 ZKSCAN2Q63HK3 967 aa21.67■■□□□ 1.06
HDAC6-235ENST00000495515 NUTM1Q86Y26 1132 aa21.67■■□□□ 1.06
HDAC6-235ENST00000495515 SRCIN1Q9C0H9 1055 aa21.67■■□□□ 1.06
HDAC6-235ENST00000495515 ALDH1L1O75891 902 aa21.66■■□□□ 1.06
HDAC6-235ENST00000495515 ERFEQ4G0M1 354 aa21.66■■□□□ 1.06
HDAC6-235ENST00000495515 ATF7IPQ6VMQ6 1270 aa21.66■■□□□ 1.06
HDAC6-235ENST00000495515 ZBTB38Q8NAP3 1195 aaPredicted RBP21.66■■□□□ 1.06
HDAC6-235ENST00000495515 ANKRD36CQ5JPF3 1778 aa21.66■■□□□ 1.06
HDAC6-235ENST00000495515 NRXN2Q9P2S2 1712 aa21.66■■□□□ 1.06
HDAC6-235ENST00000495515 PCCAP05165 728 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-235ENST00000495515 CCT4P50991 539 aaKnown RBP21.65■■□□□ 1.06
HDAC6-235ENST00000495515 SLC10A5Q5PT55 438 aa21.65■■□□□ 1.06
HDAC6-235ENST00000495515 CCDC24Q8N4L8 307 aa21.65■■□□□ 1.06
HDAC6-235ENST00000495515 H0YIN7 160 aa21.64■■□□□ 1.05
HDAC6-235ENST00000495515 GCKRQ14397 625 aa21.64■■□□□ 1.05
HDAC6-235ENST00000495515 FAM89AQ96GI7 184 aa21.64■■□□□ 1.05
HDAC6-235ENST00000495515 PXDNLA1KZ92 1463 aa21.64■■□□□ 1.05
HDAC6-235ENST00000495515 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.63■■□□□ 1.05
HDAC6-235ENST00000495515 NLRP3Q96P20 1036 aa21.63■■□□□ 1.05
HDAC6-235ENST00000495515 RIC1Q4ADV7 1423 aa21.63■■□□□ 1.05
HDAC6-235ENST00000495515 AFDNP55196 1824 aaKnown RBP21.62■■□□□ 1.05
HDAC6-235ENST00000495515 MS4A1P11836 297 aa21.62■■□□□ 1.05
HDAC6-235ENST00000495515 TRIM27P14373 513 aa21.62■■□□□ 1.05
HDAC6-235ENST00000495515 C2CD5Q86YS7 1000 aa21.62■■□□□ 1.05
HDAC6-235ENST00000495515 ABCC12Q96J65 1359 aa21.61■■□□□ 1.05
HDAC6-235ENST00000495515 IRS4O14654 1257 aaPredicted RBP21.61■■□□□ 1.05
HDAC6-235ENST00000495515 RTL5Q5HYW3 569 aaPredicted RBP21.61■■□□□ 1.05
HDAC6-235ENST00000495515 NLGN2Q8NFZ4 835 aa21.61■■□□□ 1.05
HDAC6-235ENST00000495515 C9orf78Q9NZ63 289 aaPredicted RBP21.61■■□□□ 1.05
HDAC6-235ENST00000495515 CDHR2Q9BYE9 1310 aa21.6■■□□□ 1.05
HDAC6-235ENST00000495515 A0A0G2JLW4 131 aa21.6■■□□□ 1.05
HDAC6-235ENST00000495515 KLRG2A4D1S0 409 aaPredicted RBP21.6■■□□□ 1.05
HDAC6-235ENST00000495515 H7C1W4 665 aa21.6■■□□□ 1.05
HDAC6-235ENST00000495515 DPEP1P16444 411 aa21.6■■□□□ 1.05
HDAC6-235ENST00000495515 FTSJ3Q8IY81 847 aaKnown RBP21.6■■□□□ 1.05
HDAC6-235ENST00000495515 ABCC4O15439 1325 aa21.59■■□□□ 1.05
HDAC6-235ENST00000495515 CHD4Q14839 1912 aa21.59■■□□□ 1.05
HDAC6-235ENST00000495515 HCLS1P14317 486 aaPredicted RBP21.59■■□□□ 1.05
HDAC6-235ENST00000495515 UBE3BQ7Z3V4 1068 aa21.59■■□□□ 1.05
HDAC6-235ENST00000495515 KIF13BQ9NQT8 1826 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 GRM8O00222 908 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 NPR1P16066 1061 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 CHRNA5P30532 468 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 DZIP1LQ8IYY4 767 aaKnown RBP21.58■■□□□ 1.05
HDAC6-235ENST00000495515 SYNE4Q8N205 404 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 RPGRQ92834 1020 aaKnown RBP21.58■■□□□ 1.05
HDAC6-235ENST00000495515 CLUAP1Q96AJ1 413 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 MASTLQ96GX5 879 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 PIM2Q9P1W9 311 aa21.58■■□□□ 1.05
HDAC6-235ENST00000495515 PDE8AO60658 829 aa21.57■■□□□ 1.04
HDAC6-235ENST00000495515 SRGNP10124 158 aa21.57■■□□□ 1.04
HDAC6-235ENST00000495515 YY1P25490 414 aa21.57■■□□□ 1.04
HDAC6-235ENST00000495515 CRY2Q49AN0 593 aa21.57■■□□□ 1.04
HDAC6-235ENST00000495515 INTS3Q68E01 1043 aaKnown RBP21.57■■□□□ 1.04
HDAC6-235ENST00000495515 STYK1Q6J9G0 422 aa21.57■■□□□ 1.04
HDAC6-235ENST00000495515 ZNF622Q969S3 477 aaKnown RBP eCLIP21.57■■□□□ 1.04
HDAC6-235ENST00000495515 JARID2Q92833 1246 aaPredicted RBP21.56■■□□□ 1.04
HDAC6-235ENST00000495515 CNKSR1Q969H4 720 aa21.56■■□□□ 1.04
HDAC6-235ENST00000495515 HDAC5Q9UQL6 1122 aa21.56■■□□□ 1.04
HDAC6-235ENST00000495515 ALDH1B1P30837 517 aa21.55■■□□□ 1.04
HDAC6-235ENST00000495515 RBM17Q96I25 401 aaKnown RBP21.55■■□□□ 1.04
HDAC6-235ENST00000495515 KCNA3P22001 575 aa21.54■■□□□ 1.04
HDAC6-235ENST00000495515 SF3B3Q15393 1217 aaKnown RBP21.54■■□□□ 1.04
HDAC6-235ENST00000495515 DALRD3Q5D0E6 543 aaKnown RBP21.54■■□□□ 1.04
HDAC6-235ENST00000495515 TTLL6Q8N841 843 aa21.54■■□□□ 1.04
HDAC6-235ENST00000495515 PLA2G12BQ9BX93 195 aa21.54■■□□□ 1.04
HDAC6-235ENST00000495515 HOXA10P31260 410 aaPredicted RBP21.53■■□□□ 1.04
HDAC6-235ENST00000495515 CASP7P55210 303 aa21.53■■□□□ 1.04
HDAC6-235ENST00000495515 CCDC152Q4G0S7 254 aa21.53■■□□□ 1.04
HDAC6-235ENST00000495515 DDX46Q7L014 1031 aaKnown RBP21.53■■□□□ 1.04
HDAC6-235ENST00000495515 UTYO14607 1347 aa21.53■■□□□ 1.04
HDAC6-235ENST00000495515 C3orf67Q6ZVT6 689 aa21.52■■□□□ 1.04
HDAC6-235ENST00000495515 TMEM57Q8N5G2 664 aa21.52■■□□□ 1.04
HDAC6-235ENST00000495515 USP44Q9H0E7 712 aa21.52■■□□□ 1.04
HDAC6-235ENST00000495515 TNNQ9UQP3 1299 aa21.52■■□□□ 1.04
HDAC6-235ENST00000495515 NBPF7P0C2Y1 421 aaPredicted RBP21.51■■□□□ 1.03
HDAC6-235ENST00000495515 CTSWP56202 376 aa21.51■■□□□ 1.03
HDAC6-235ENST00000495515 GPR162Q16538 588 aa21.51■■□□□ 1.03
HDAC6-235ENST00000495515 PELP1Q8IZL8 1130 aaKnown RBP21.51■■□□□ 1.03
HDAC6-235ENST00000495515 CRAMP1Q96RY5 1269 aa21.51■■□□□ 1.03
HDAC6-235ENST00000495515 BCS1LQ9Y276 419 aa21.51■■□□□ 1.03
HDAC6-235ENST00000495515 ANKRD31Q8N7Z5 1873 aa21.51■■□□□ 1.03
HDAC6-235ENST00000495515 PLIN1O60240 522 aa21.5■■□□□ 1.03
HDAC6-235ENST00000495515 GNAI3P08754 354 aa21.5■■□□□ 1.03
HDAC6-235ENST00000495515 UBTFL1P0CB47 393 aaPredicted RBP21.5■■□□□ 1.03
HDAC6-235ENST00000495515 PDE3AQ14432 1141 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 347.4 ms