RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TXLNAP40222 546 aa6.81□□□□□ -1.32
VPS13A-212ENST00000493341 TAF1CQ15572 869 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 PPARGC1BQ86YN6 1023 aaKnown RBP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 CCDC74AQ96AQ1 378 aa6.81□□□□□ -1.32
VPS13A-212ENST00000493341 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 V9GY48 417 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 GTF2E1P29083 439 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 KCNC4Q03721 635 aa6.81□□□□□ -1.32
VPS13A-212ENST00000493341 PTPN12Q05209 780 aaKnown RBP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 SOGA3Q5TF21 947 aa6.81□□□□□ -1.32
VPS13A-212ENST00000493341 FOXD3Q9UJU5 478 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-212ENST00000493341 USP31Q70CQ4 1352 aa6.8□□□□□ -1.32
VPS13A-212ENST00000493341 TNFRSF21O75509 655 aa6.8□□□□□ -1.32
VPS13A-212ENST00000493341 AIDAQ96BJ3 306 aa6.8□□□□□ -1.32
VPS13A-212ENST00000493341 AGBL1Q96MI9 1066 aa6.8□□□□□ -1.32
VPS13A-212ENST00000493341 SBNO2Q9Y2G9 1366 aa6.8□□□□□ -1.32
VPS13A-212ENST00000493341 RELBQ01201 579 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 BMS1Q14692 1282 aaKnown RBP6.79□□□□□ -1.32
VPS13A-212ENST00000493341 C1orf53Q5VUE5 145 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 SDE2Q6IQ49 451 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 MRGPRX2Q96LB1 330 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 ZNF395Q9H8N7 513 aaPredicted RBP6.79□□□□□ -1.32
VPS13A-212ENST00000493341 USP20Q9Y2K6 914 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 ATF4P18848 351 aaPredicted RBP6.79□□□□□ -1.32
VPS13A-212ENST00000493341 PTGIRP43119 386 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 PAK2Q13177 524 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 ZNF438Q7Z4V0 828 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 RHPN1Q8TCX5 695 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 OSBPL2Q9H1P3 480 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 NEUROD4Q9HD90 331 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 FAM8A1Q9UBU6 413 aa6.79□□□□□ -1.32
VPS13A-212ENST00000493341 GIPC1O14908 333 aa6.78□□□□□ -1.32
VPS13A-212ENST00000493341 FGRP09769 529 aa6.78□□□□□ -1.32
VPS13A-212ENST00000493341 USP17L7P0C7H9 530 aa6.78□□□□□ -1.32
VPS13A-212ENST00000493341 NXPE4Q6UWF7 544 aa6.78□□□□□ -1.32
VPS13A-212ENST00000493341 RHBDD1Q8TEB9 315 aa6.78□□□□□ -1.32
VPS13A-212ENST00000493341 COPRSQ9NQ92 184 aa6.78□□□□□ -1.32
VPS13A-212ENST00000493341 ALDH1A1P00352 501 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 PLA2G4AP47712 749 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 GJA8P48165 433 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 NNTQ13423 1086 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 GPRASP2Q96D09 838 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 NPHS2Q9NP85 383 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 TBX22Q9Y458 520 aa6.77□□□□□ -1.32
VPS13A-212ENST00000493341 TGFBR3LH3BV60 316 aa6.77□□□□□ -1.33
VPS13A-212ENST00000493341 CMTR1Q8N1G2 835 aaKnown RBP6.77□□□□□ -1.33
VPS13A-212ENST00000493341 SNX29Q8TEQ0 813 aa6.77□□□□□ -1.33
VPS13A-212ENST00000493341 FNDC3AQ9Y2H6 1198 aaKnown RBP6.77□□□□□ -1.33
VPS13A-212ENST00000493341 IDH3AP50213 366 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 HIF1AQ16665 826 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 SLC27A3Q5K4L6 730 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 LIAT1Q6ZQX7 453 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 NLGN1Q8N2Q7 840 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 ZNF280CQ8ND82 737 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 ITPKCQ96DU7 683 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 WASF2Q9Y6W5 498 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 WNT7AO00755 349 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 PHACTR2O75167 634 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 GADD45BO75293 160 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-212ENST00000493341 POLR3DP05423 398 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-212ENST00000493341 ST13P50502 369 aaKnown RBP6.76□□□□□ -1.33
VPS13A-212ENST00000493341 NBPF1Q3BBV0 1214 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 GNASQ5JWF2 1037 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 EGFLAMQ63HQ2 1017 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 Q6ZVU0 165 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 HSH2DQ96JZ2 352 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 SUSD3Q96L08 255 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 BCO2Q9BYV7 579 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 ZFYVE28Q9HCC9 887 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.76□□□□□ -1.33
VPS13A-212ENST00000493341 KBTBD4Q9NVX7 518 aa6.76□□□□□ -1.33
VPS13A-212ENST00000493341 UBAP1LF5GYI3 381 aa6.75□□□□□ -1.33
VPS13A-212ENST00000493341 KLRG1Q96E93 195 aa6.75□□□□□ -1.33
VPS13A-212ENST00000493341 ZIC2O95409 532 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 SSBP05455 408 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 PDE12Q6L8Q7 609 aaKnown RBP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 ZNF746Q6NUN9 644 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 XKR5Q6UX68 686 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 BICDL1Q6ZP65 573 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 ERMP1Q7Z2K6 904 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 CKAP2LQ8IYA6 745 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 CHMP4AQ9BY43 222 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 SRCIN1Q9C0H9 1055 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 ELP3Q9H9T3 547 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 RTCBQ9Y3I0 505 aaKnown RBP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 F6X3S4 739 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 PHKA2P46019 1235 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 TRIP4Q15650 581 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 C4orf17Q53FE4 359 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 C7orf43Q8WVR3 580 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 SPACA7Q96KW9 195 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 SPON2Q9BUD6 331 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 TMEM63CQ9P1W3 806 aa6.74□□□□□ -1.33
VPS13A-212ENST00000493341 DMGDHQ9UI17 866 aaKnown RBP6.74□□□□□ -1.33
VPS13A-212ENST00000493341 ARSDP51689 593 aa6.73□□□□□ -1.33
VPS13A-212ENST00000493341 TCEAL1Q15170 157 aa6.73□□□□□ -1.33
VPS13A-212ENST00000493341 NFE2L2Q16236 605 aa6.73□□□□□ -1.33
VPS13A-212ENST00000493341 JAZF1Q86VZ6 243 aa6.73□□□□□ -1.33
VPS13A-212ENST00000493341 ZFAND3Q9H8U3 227 aa6.73□□□□□ -1.33
VPS13A-212ENST00000493341 MRPL42Q9Y6G3 142 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms