RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 SLC26A6Q9BXS9 759 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 B4DLN1 442 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 MRPL12P52815 198 aaKnown RBP15.11■□□□□ 0.01
COL6A3-212ENST00000491769 NLRP3Q96P20 1036 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 KIAA1107Q9UPP5 1409 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 UBA7P41226 1012 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 IARSP41252 1262 aaKnown RBP15.11■□□□□ 0.01
COL6A3-212ENST00000491769 KIF4BQ2VIQ3 1234 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 FBXO31Q5XUX0 539 aaPredicted RBP15.11■□□□□ 0.01
COL6A3-212ENST00000491769 SMARCC2Q8TAQ2 1214 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 ANO10Q9NW15 660 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 CD109Q6YHK3 1445 aa15.11■□□□□ 0.01
COL6A3-212ENST00000491769 ZNF804AQ7Z570 1209 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 MTERF4Q7Z6M4 381 aaKnown RBP15.1■□□□□ 0.01
COL6A3-212ENST00000491769 LARP6Q9BRS8 491 aaKnown RBP15.1■□□□□ 0.01
COL6A3-212ENST00000491769 DDX23Q9BUQ8 820 aaKnown RBP15.1■□□□□ 0.01
COL6A3-212ENST00000491769 PPFIA3O75145 1194 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 CYP7A1P22680 504 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 PAFAH1B1P43034 410 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 SFPQP23246 707 aaKnown RBP eCLIP15.1■□□□□ 0.01
COL6A3-212ENST00000491769 CALM1P0DP23 149 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 CALM2P0DP24 149 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 CALM3P0DP25 149 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 ZGPATQ8N5A5 531 aaKnown RBP15.1■□□□□ 0.01
COL6A3-212ENST00000491769 USP16Q9Y5T5 823 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 SNAPC4Q5SXM2 1469 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 DDB1Q16531 1140 aa15.1■□□□□ 0.01
COL6A3-212ENST00000491769 METAP2P50579 478 aaKnown RBP eCLIP15.09■□□□□ 0.01
COL6A3-212ENST00000491769 PPP1R14CQ8TAE6 165 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 NOD1Q9Y239 953 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 HEATR3Q7Z4Q2 680 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 SERPINA10Q9UK55 444 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 NIP7Q9Y221 180 aaKnown RBP eCLIP15.09■□□□□ 0.01
COL6A3-212ENST00000491769 FSD2A1L4K1 749 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 CCDC117Q8IWD4 279 aaPredicted RBP15.09■□□□□ 0.01
COL6A3-212ENST00000491769 FANCIQ9NVI1 1328 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 ZSCAN12O43309 604 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 HLTFQ14527 1009 aaKnown RBP eCLIP15.09■□□□□ 0.01
COL6A3-212ENST00000491769 SPECC1Q5M775 1068 aa15.09■□□□□ 0.01
COL6A3-212ENST00000491769 ZCRB1Q8TBF4 217 aaKnown RBP15.09■□□□□ 0.01
COL6A3-212ENST00000491769 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.09■□□□□ 0.01
COL6A3-212ENST00000491769 PDIA4P13667 645 aaKnown RBP15.08■□□□□ 0.01
COL6A3-212ENST00000491769 TMCO3Q6UWJ1 677 aa15.08■□□□□ 0.01
COL6A3-212ENST00000491769 IKBKGQ9Y6K9 419 aa15.08■□□□□ 0.01
COL6A3-212ENST00000491769 SP4Q02446 784 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 WASLO00401 505 aaPredicted RBP15.08■□□□□ 0
COL6A3-212ENST00000491769 UQCRFS1P1P0C7P4 283 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 UBXN4Q92575 508 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 EXOC1Q9NV70 894 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 SNRPA1P09661 255 aaKnown RBP15.08■□□□□ 0
COL6A3-212ENST00000491769 TBC1D5Q92609 795 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 ALS2CR12Q96Q35 445 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 ZBTB21Q9ULJ3 1066 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 IFT140Q96RY7 1462 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 FAM114A1Q8IWE2 563 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 ZC3H12CQ9C0D7 883 aaKnown RBP15.08■□□□□ 0
COL6A3-212ENST00000491769 LRRC27Q9C0I9 530 aa15.08■□□□□ 0
COL6A3-212ENST00000491769 MRVI1Q9Y6F6 885 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 SLC4A4Q9Y6R1 1079 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 RAB3IL1Q8TBN0 382 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 BIN1O00499 593 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 KRT13P13646 458 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 GJC1P36383 396 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 IFIT1BQ5T764 474 aaKnown RBP15.07■□□□□ 0
COL6A3-212ENST00000491769 USP37Q86T82 979 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 SMARCC1Q92922 1105 aaPredicted RBP15.07■□□□□ 0
COL6A3-212ENST00000491769 TRAF1Q13077 416 aa15.07■□□□□ 0
COL6A3-212ENST00000491769 SYCE3A1L190 88 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 NDC80O14777 642 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 AKNAD1Q5T1N1 836 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 FSIP1Q8NA03 581 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 RTCBQ9Y3I0 505 aaKnown RBP15.06■□□□□ 0
COL6A3-212ENST00000491769 NCOA7Q8NI08 942 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 GBP3Q9H0R5 595 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 ZNF710Q8N1W2 664 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 EVI5LQ96CN4 794 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 SH2B1Q9NRF2 756 aaPredicted RBP15.06■□□□□ 0
COL6A3-212ENST00000491769 ISM2Q6H9L7 571 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 IMPG2Q9BZV3 1241 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 PPP4R3BQ5MIZ7 849 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 WTAPQ15007 396 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 ATP2B3Q16720 1220 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 NYXQ9GZU5 481 aa15.06■□□□□ 0
COL6A3-212ENST00000491769 MAP9Q49MG5 647 aa15.05■□□□□ 0
COL6A3-212ENST00000491769 NAA16Q6N069 864 aaPredicted RBP15.05■□□□□ -0
COL6A3-212ENST00000491769 SHTN1A0MZ66 631 aa15.05■□□□□ -0
COL6A3-212ENST00000491769 URI1O94763 535 aaPredicted RBP15.05■□□□□ -0
COL6A3-212ENST00000491769 FLIIQ13045 1269 aa15.05■□□□□ -0
COL6A3-212ENST00000491769 SCAND2PQ9GZW5 306 aaPredicted RBP15.05■□□□□ -0
COL6A3-212ENST00000491769 ERICH3Q5RHP9 1530 aa15.04■□□□□ -0
COL6A3-212ENST00000491769 NSFL1CQ9UNZ2 370 aaKnown RBP15.04■□□□□ -0
COL6A3-212ENST00000491769 TRIM47Q96LD4 638 aa15.04■□□□□ -0
COL6A3-212ENST00000491769 STK32BQ9NY57 414 aa15.04■□□□□ -0
COL6A3-212ENST00000491769 ANXA1P04083 346 aa15.04■□□□□ -0
COL6A3-212ENST00000491769 TNNI2P48788 182 aa15.04■□□□□ -0
COL6A3-212ENST00000491769 ORC3Q9UBD5 711 aaPredicted RBP15.04■□□□□ -0
COL6A3-212ENST00000491769 SH3BP5O60239 455 aa15.03■□□□□ -0
COL6A3-212ENST00000491769 EP400NLQ6ZTU2 488 aa15.03■□□□□ -0
COL6A3-212ENST00000491769 C6orf50Q9HD87 102 aa15.03■□□□□ -0
COL6A3-212ENST00000491769 NAPAP54920 295 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms