RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, human

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-208	ENST00000490788	BNIP3L	O60238	219 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	FAM157B	P0CG42	384 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	MAPT	P10636	758 aa	Known RBP	4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	EPB42	P16452	691 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	ATP2B4	P23634	1241 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	SAMD5	Q5TGI4	173 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	CLP1	Q92989	425 aa	Known RBP	4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	HSH2D	Q96JZ2	352 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	SUSD3	Q96L08	255 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	MKNK1	Q9BUB5	465 aa		4.12	□□□□□ -1.75
HMGB1-208	ENST00000490788	FURIN	P09958	794 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	FKBP5	Q13451	457 aa	Predicted RBP	4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	DGKZ	Q13574	1117 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZMYM1	Q5SVZ6	1142 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	POTEA	Q6S8J7	498 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	BRD7	Q9NPI1	651 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	MARK1	Q9P0L2	795 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	CXXC1	Q9P0U4	656 aa	Predicted RBP	4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	GDF2	Q9UK05	429 aa	Predicted RBP	4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	UST	Q9Y2C2	406 aa		4.11	□□□□□ -1.75
HMGB1-208	ENST00000490788	TGFBR3L	H3BV60	316 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	THBS1	P07996	1170 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	CD33	P20138	364 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	TNP2	Q05952	138 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	FAM69C	Q0P6D2	419 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	C11orf91	Q3C1V1	193 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	C16orf46	Q6P387	395 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	BTLA	Q7Z6A9	289 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	GOLGA6L1	Q8N7Z2	621 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	COL26A1	Q96A83	441 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	PNMA5	Q96PV4	448 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	OXCT2	Q9BYC2	517 aa	Predicted RBP	4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	KLK14	Q9P0G3	267 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	MKL2	Q9ULH7	1088 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	KCNH4	Q9UQ05	1017 aa		4.1	□□□□□ -1.75
HMGB1-208	ENST00000490788	PIK3R2	O00459	728 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	AMPD1	P23109	780 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	BRD2	P25440	801 aa	Known RBP	4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	CTBS	Q01459	385 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	UBAP2L	Q14157	1087 aa	Known RBP	4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	NAA30	Q147X3	362 aa	Predicted RBP	4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	OCLN	Q16625	522 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	FAM182B	Q5T319	152 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	IER5	Q5VY09	327 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	ZNF280C	Q8ND82	737 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	KLRG1	Q96E93	195 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	IFT43	Q96FT9	208 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	QTRT2	Q9H974	415 aa	Known RBP	4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	NDFIP2	Q9NV92	336 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	FAM13B	Q9NYF5	915 aa		4.09	□□□□□ -1.75
HMGB1-208	ENST00000490788	KRBA1	A5PL33	1030 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	ARAF	P10398	606 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	ADH6	P28332	368 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	IDH3A	P50213	366 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	ARSD	P51689	593 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	TYRO3	Q06418	890 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	TTC16	Q8NEE8	873 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	MYO19	Q96H55	970 aa		4.08	□□□□□ -1.76
HMGB1-208	ENST00000490788	TMEM88B	A6NKF7	163 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	NEURL1B	A8MQ27	555 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	EFS	O43281	561 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	MICAL2	O94851	1124 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	ALAS2	P22557	587 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	ARID4A	P29374	1257 aa	Predicted RBP	4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	TXK	P42681	527 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	SNRPN	P63162	240 aa	Known RBP	4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	SPEM2	Q0P670	501 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	SFSWAP	Q12872	951 aa	Known RBP	4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	FZD5	Q13467	585 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	AAMP	Q13685	434 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	COX20	Q5RI15	118 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	TREML1	Q86YW5	311 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	ABTB2	Q8N961	1025 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	C7orf43	Q8WVR3	580 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	RRAGC	Q9HB90	399 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	AVEN	Q9NQS1	362 aa	Predicted RBP	4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	GGA1	Q9UJY5	639 aa		4.07	□□□□□ -1.76
HMGB1-208	ENST00000490788	PCSK2	P16519	638 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	COL8A1	P27658	744 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	SSFA2	P28290	1259 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	KCNQ4	P56696	695 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	PCBP4	P57723	403 aa	Known RBP	4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	TBC1D8B	Q0IIM8	1120 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	SYT9	Q86SS6	491 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	RGL4	Q8IZJ4	473 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	CMTR1	Q8N1G2	835 aa	Known RBP	4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	RETREG2	Q8NC44	543 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	EDARADD	Q8WWZ3	215 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	PIK3R5	Q8WYR1	880 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	BHMT	Q93088	406 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	IGFLR1	Q9H665	355 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	EFCC1	Q9HA90	598 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	STRN4	Q9NRL3	753 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	STIM2	Q9P246	746 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	LRFN2	Q9ULH4	789 aa		4.06	□□□□□ -1.76
HMGB1-208	ENST00000490788	CARNS1	A5YM72	827 aa		4.05	□□□□□ -1.76
HMGB1-208	ENST00000490788	SHISA8	B8ZZ34	492 aa		4.05	□□□□□ -1.76
HMGB1-208	ENST00000490788	C2CD2L	O14523	706 aa		4.05	□□□□□ -1.76
HMGB1-208	ENST00000490788	ABL1	P00519	1130 aa		4.05	□□□□□ -1.76

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