RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SLX4Q8IY92 1834 aa23.44■■□□□ 1.34
COL9A3-214ENST00000490398 ATP5J2-PTCD1G3V325 749 aa23.43■■□□□ 1.34
COL9A3-214ENST00000490398 CRY2Q49AN0 593 aa23.43■■□□□ 1.34
COL9A3-214ENST00000490398 C7orf43Q8WVR3 580 aa23.43■■□□□ 1.34
COL9A3-214ENST00000490398 UTP14AQ9BVJ6 771 aaKnown RBP23.43■■□□□ 1.34
COL9A3-214ENST00000490398 TWISTNBQ3B726 338 aaPredicted RBP23.42■■□□□ 1.34
COL9A3-214ENST00000490398 HSP90AB3PQ58FF7 597 aa23.42■■□□□ 1.34
COL9A3-214ENST00000490398 PPP1R42Q7Z4L9 355 aa23.42■■□□□ 1.34
COL9A3-214ENST00000490398 ISCA1Q9BUE6 129 aa23.42■■□□□ 1.34
COL9A3-214ENST00000490398 RNF181Q9P0P0 153 aa23.42■■□□□ 1.34
COL9A3-214ENST00000490398 CCDC30Q5VVM6 783 aa23.41■■□□□ 1.34
COL9A3-214ENST00000490398 ANKRD36CQ5JPF3 1778 aa23.4■■□□□ 1.34
COL9A3-214ENST00000490398 ZNF521Q96K83 1311 aa23.4■■□□□ 1.34
COL9A3-214ENST00000490398 EXOSC9Q06265 439 aaKnown RBP23.4■■□□□ 1.34
COL9A3-214ENST00000490398 G2E3Q7L622 706 aa23.4■■□□□ 1.34
COL9A3-214ENST00000490398 RIC1Q4ADV7 1423 aa23.4■■□□□ 1.34
COL9A3-214ENST00000490398 HCLS1P14317 486 aaPredicted RBP23.39■■□□□ 1.33
COL9A3-214ENST00000490398 SLC10A5Q5PT55 438 aa23.39■■□□□ 1.33
COL9A3-214ENST00000490398 TRMT112Q9UI30 125 aaKnown RBP23.39■■□□□ 1.33
COL9A3-214ENST00000490398 CACNA1SQ13698 1873 aa23.39■■□□□ 1.33
COL9A3-214ENST00000490398 RIC3Q7Z5B4 369 aa23.38■■□□□ 1.33
COL9A3-214ENST00000490398 CCER2I3L3R5 266 aa23.37■■□□□ 1.33
COL9A3-214ENST00000490398 VAMP4O75379 141 aa23.37■■□□□ 1.33
COL9A3-214ENST00000490398 GPBP1L1Q9HC44 474 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-214ENST00000490398 SBF1O95248 1867 aa23.36■■□□□ 1.33
COL9A3-214ENST00000490398 LMNB1P20700 586 aa23.36■■□□□ 1.33
COL9A3-214ENST00000490398 HOXA10P31260 410 aaPredicted RBP23.36■■□□□ 1.33
COL9A3-214ENST00000490398 GOLGA2Q08379 1002 aa23.36■■□□□ 1.33
COL9A3-214ENST00000490398 RTL5Q5HYW3 569 aaPredicted RBP23.36■■□□□ 1.33
COL9A3-214ENST00000490398 MYD88Q99836 296 aa23.36■■□□□ 1.33
COL9A3-214ENST00000490398 ARFGEF2Q9Y6D5 1785 aa23.36■■□□□ 1.33
COL9A3-214ENST00000490398 FAM89AQ96GI7 184 aa23.35■■□□□ 1.33
COL9A3-214ENST00000490398 SLC4A2P04920 1241 aa23.34■■□□□ 1.33
COL9A3-214ENST00000490398 ALDH1B1P30837 517 aa23.34■■□□□ 1.33
COL9A3-214ENST00000490398 RPGRQ92834 1020 aaKnown RBP23.34■■□□□ 1.33
COL9A3-214ENST00000490398 NLRP3Q96P20 1036 aa23.34■■□□□ 1.33
COL9A3-214ENST00000490398 SH3TC1Q8TE82 1336 aa23.33■■□□□ 1.33
COL9A3-214ENST00000490398 FER1L6Q2WGJ9 1857 aa23.33■■□□□ 1.33
COL9A3-214ENST00000490398 SNED1Q8TER0 1413 aa23.33■■□□□ 1.32
COL9A3-214ENST00000490398 RNF123Q5XPI4 1314 aa23.33■■□□□ 1.32
COL9A3-214ENST00000490398 PI4KAP2A4QPH2 592 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 TRIM28Q13263 835 aaKnown RBP23.32■■□□□ 1.32
COL9A3-214ENST00000490398 CCDC93Q567U6 631 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 MIER1Q8N108 512 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 PI4KAP1Q8N8J0 262 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 JARID2Q92833 1246 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-214ENST00000490398 STK31Q9BXU1 1019 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 TAOK3Q9H2K8 898 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 NMRK2Q9NPI5 230 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 MAP3K2Q9Y2U5 619 aa23.32■■□□□ 1.32
COL9A3-214ENST00000490398 KIF3CO14782 793 aa23.31■■□□□ 1.32
COL9A3-214ENST00000490398 RBM17Q96I25 401 aaKnown RBP23.31■■□□□ 1.32
COL9A3-214ENST00000490398 CRAMP1Q96RY5 1269 aa23.31■■□□□ 1.32
COL9A3-214ENST00000490398 METTL22Q9BUU2 404 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-214ENST00000490398 MYH16Q9H6N6 1097 aa23.31■■□□□ 1.32
COL9A3-214ENST00000490398 ABCC4O15439 1325 aa23.31■■□□□ 1.32
COL9A3-214ENST00000490398 LTBP3Q9NS15 1303 aa23.31■■□□□ 1.32
COL9A3-214ENST00000490398 DIEXFQ68CQ4 756 aaKnown RBP23.3■■□□□ 1.32
COL9A3-214ENST00000490398 KSR2Q6VAB6 950 aa23.3■■□□□ 1.32
COL9A3-214ENST00000490398 IGKV5-2P06315 115 aa23.29■■□□□ 1.32
COL9A3-214ENST00000490398 C1QTNF8P60827 252 aa23.29■■□□□ 1.32
COL9A3-214ENST00000490398 SOGA3Q5TF21 947 aa23.29■■□□□ 1.32
COL9A3-214ENST00000490398 CHMP4AQ9BY43 222 aa23.29■■□□□ 1.32
COL9A3-214ENST00000490398 LAMB2P55268 1798 aa23.29■■□□□ 1.32
COL9A3-214ENST00000490398 DDX58O95786 925 aaKnown RBP23.28■■□□□ 1.32
COL9A3-214ENST00000490398 CDCA7LQ96GN5 454 aa23.28■■□□□ 1.32
COL9A3-214ENST00000490398 ZNF277Q9NRM2 450 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-214ENST00000490398 DDX60Q8IY21 1712 aaKnown RBP23.28■■□□□ 1.32
COL9A3-214ENST00000490398 PPEF1O14829 653 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-214ENST00000490398 FKBP4Q02790 459 aaKnown RBP eCLIP23.27■■□□□ 1.32
COL9A3-214ENST00000490398 FLIIQ13045 1269 aa23.27■■□□□ 1.32
COL9A3-214ENST00000490398 COL4A1P02462 1669 aa23.27■■□□□ 1.32
COL9A3-214ENST00000490398 CCDC88AQ3V6T2 1871 aa23.26■■□□□ 1.31
COL9A3-214ENST00000490398 IRS4O14654 1257 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-214ENST00000490398 TIAM2Q8IVF5 1701 aa23.25■■□□□ 1.31
COL9A3-214ENST00000490398 CWF19L2Q2TBE0 894 aaKnown RBP23.25■■□□□ 1.31
COL9A3-214ENST00000490398 ZBTB38Q8NAP3 1195 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-214ENST00000490398 CCDC191Q8NCU4 936 aa23.25■■□□□ 1.31
COL9A3-214ENST00000490398 CWC25Q9NXE8 425 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-214ENST00000490398 SLFN5Q08AF3 891 aa23.24■■□□□ 1.31
COL9A3-214ENST00000490398 RTKN2Q8IZC4 609 aa23.24■■□□□ 1.31
COL9A3-214ENST00000490398 RRAGCQ9HB90 399 aa23.24■■□□□ 1.31
COL9A3-214ENST00000490398 SF3B3Q15393 1217 aaKnown RBP23.23■■□□□ 1.31
COL9A3-214ENST00000490398 ZC3H4Q9UPT8 1303 aaKnown RBP23.23■■□□□ 1.31
COL9A3-214ENST00000490398 GLTPD2A6NH11 291 aa23.22■■□□□ 1.31
COL9A3-214ENST00000490398 PCCAP05165 728 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-214ENST00000490398 FKBP5Q13451 457 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-214ENST00000490398 DDX46Q7L014 1031 aaKnown RBP23.22■■□□□ 1.31
COL9A3-214ENST00000490398 CELF1Q92879 486 aaKnown RBP23.22■■□□□ 1.31
COL9A3-214ENST00000490398 ATP6V0A2Q9Y487 856 aa23.22■■□□□ 1.31
COL9A3-214ENST00000490398 COL4A5P29400 1685 aa23.22■■□□□ 1.31
COL9A3-214ENST00000490398 TAF1P21675 1872 aa23.22■■□□□ 1.31
COL9A3-214ENST00000490398 NEURL1BA8MQ27 555 aa23.21■■□□□ 1.31
COL9A3-214ENST00000490398 E9PSI1 815 aa23.21■■□□□ 1.31
COL9A3-214ENST00000490398 F6X3S4 739 aa23.21■■□□□ 1.31
COL9A3-214ENST00000490398 GRAPQ13588 217 aa23.21■■□□□ 1.31
COL9A3-214ENST00000490398 GRAPLQ8TC17 118 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-214ENST00000490398 KDM2BQ8NHM5 1336 aa23.2■■□□□ 1.3
COL9A3-214ENST00000490398 IARSP41252 1262 aaKnown RBP23.2■■□□□ 1.3
COL9A3-214ENST00000490398 CC2D2BQ6DHV5 1058 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms