RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 RIC1Q4ADV7 1423 aa27.38■■□□□ 1.97
LIME1-207ENST00000489212 FER1L6Q2WGJ9 1857 aa27.37■■□□□ 1.97
LIME1-207ENST00000489212 UTP14AQ9BVJ6 771 aaKnown RBP27.37■■□□□ 1.97
LIME1-207ENST00000489212 PHAXQ9H814 394 aaKnown RBP27.37■■□□□ 1.97
LIME1-207ENST00000489212 C3orf67Q6ZVT6 689 aa27.36■■□□□ 1.97
LIME1-207ENST00000489212 WDR63Q8IWG1 891 aa27.36■■□□□ 1.97
LIME1-207ENST00000489212 C7orf43Q8WVR3 580 aa27.36■■□□□ 1.97
LIME1-207ENST00000489212 CCDC88AQ3V6T2 1871 aa27.36■■□□□ 1.97
LIME1-207ENST00000489212 ZNF428Q96B54 188 aa27.34■■□□□ 1.97
LIME1-207ENST00000489212 FANCIQ9NVI1 1328 aa27.34■■□□□ 1.97
LIME1-207ENST00000489212 LMNB1P20700 586 aa27.33■■□□□ 1.97
LIME1-207ENST00000489212 SLC10A5Q5PT55 438 aa27.33■■□□□ 1.97
LIME1-207ENST00000489212 CCDC30Q5VVM6 783 aa27.33■■□□□ 1.97
LIME1-207ENST00000489212 SYNE4Q8N205 404 aa27.33■■□□□ 1.97
LIME1-207ENST00000489212 ISCA1Q9BUE6 129 aa27.33■■□□□ 1.97
LIME1-207ENST00000489212 SPINK5Q9NQ38 1064 aaPredicted RBP27.33■■□□□ 1.97
LIME1-207ENST00000489212 OLFM4Q6UX06 510 aa27.32■■□□□ 1.96
LIME1-207ENST00000489212 ATP5J2-PTCD1G3V325 749 aa27.31■■□□□ 1.96
LIME1-207ENST00000489212 TWISTNBQ3B726 338 aaPredicted RBP27.31■■□□□ 1.96
LIME1-207ENST00000489212 TCERG1O14776 1098 aaKnown RBP27.3■■□□□ 1.96
LIME1-207ENST00000489212 ALDH1B1P30837 517 aa27.3■■□□□ 1.96
LIME1-207ENST00000489212 HOXA10P31260 410 aaPredicted RBP27.3■■□□□ 1.96
LIME1-207ENST00000489212 C1QTNF8P60827 252 aa27.3■■□□□ 1.96
LIME1-207ENST00000489212 TRMT112Q9UI30 125 aaKnown RBP27.3■■□□□ 1.96
LIME1-207ENST00000489212 RNF123Q5XPI4 1314 aa27.3■■□□□ 1.96
LIME1-207ENST00000489212 GOLGA2Q08379 1002 aa27.29■■□□□ 1.96
LIME1-207ENST00000489212 SOGA3Q5TF21 947 aa27.29■■□□□ 1.96
LIME1-207ENST00000489212 LTBP3Q9NS15 1303 aa27.29■■□□□ 1.96
LIME1-207ENST00000489212 HCLS1P14317 486 aaPredicted RBP27.28■■□□□ 1.96
LIME1-207ENST00000489212 RIC3Q7Z5B4 369 aa27.28■■□□□ 1.96
LIME1-207ENST00000489212 RPGRQ92834 1020 aaKnown RBP27.28■■□□□ 1.96
LIME1-207ENST00000489212 NLRP3Q96P20 1036 aa27.28■■□□□ 1.96
LIME1-207ENST00000489212 CHMP4AQ9BY43 222 aa27.28■■□□□ 1.96
LIME1-207ENST00000489212 TAOK3Q9H2K8 898 aa27.28■■□□□ 1.96
LIME1-207ENST00000489212 LAMB2P55268 1798 aa27.27■■□□□ 1.96
LIME1-207ENST00000489212 SH3TC1Q8TE82 1336 aa27.27■■□□□ 1.96
LIME1-207ENST00000489212 KIF3CO14782 793 aa27.27■■□□□ 1.96
LIME1-207ENST00000489212 CCDC93Q567U6 631 aa27.27■■□□□ 1.96
LIME1-207ENST00000489212 TIAM2Q8IVF5 1701 aa27.27■■□□□ 1.96
LIME1-207ENST00000489212 TRIM28Q13263 835 aaKnown RBP27.26■■□□□ 1.95
LIME1-207ENST00000489212 NMRK2Q9NPI5 230 aa27.26■■□□□ 1.95
LIME1-207ENST00000489212 DICER1Q9UPY3 1922 aaKnown RBP27.26■■□□□ 1.95
LIME1-207ENST00000489212 ZNF521Q96K83 1311 aa27.25■■□□□ 1.95
LIME1-207ENST00000489212 ZC3H4Q9UPT8 1303 aaKnown RBP27.25■■□□□ 1.95
LIME1-207ENST00000489212 EXOSC9Q06265 439 aaKnown RBP27.25■■□□□ 1.95
LIME1-207ENST00000489212 SLC51AQ86UW1 340 aa27.25■■□□□ 1.95
LIME1-207ENST00000489212 RBM17Q96I25 401 aaKnown RBP27.25■■□□□ 1.95
LIME1-207ENST00000489212 CRAMP1Q96RY5 1269 aa27.25■■□□□ 1.95
LIME1-207ENST00000489212 STK31Q9BXU1 1019 aa27.24■■□□□ 1.95
LIME1-207ENST00000489212 DDX60Q8IY21 1712 aaKnown RBP27.24■■□□□ 1.95
LIME1-207ENST00000489212 SNED1Q8TER0 1413 aa27.24■■□□□ 1.95
LIME1-207ENST00000489212 VAMP4O75379 141 aa27.23■■□□□ 1.95
LIME1-207ENST00000489212 G2E3Q7L622 706 aa27.23■■□□□ 1.95
LIME1-207ENST00000489212 FAM89AQ96GI7 184 aa27.23■■□□□ 1.95
LIME1-207ENST00000489212 MYD88Q99836 296 aa27.23■■□□□ 1.95
LIME1-207ENST00000489212 CCER2I3L3R5 266 aa27.21■■□□□ 1.95
LIME1-207ENST00000489212 DDX58O95786 925 aaKnown RBP27.21■■□□□ 1.95
LIME1-207ENST00000489212 SLC4A2P04920 1241 aa27.21■■□□□ 1.95
LIME1-207ENST00000489212 FKBP4Q02790 459 aaKnown RBP eCLIP27.21■■□□□ 1.95
LIME1-207ENST00000489212 RTKN2Q8IZC4 609 aa27.21■■□□□ 1.95
LIME1-207ENST00000489212 METTL22Q9BUU2 404 aaPredicted RBP27.21■■□□□ 1.95
LIME1-207ENST00000489212 ABCC4O15439 1325 aa27.2■■□□□ 1.95
LIME1-207ENST00000489212 RTL5Q5HYW3 569 aaPredicted RBP27.2■■□□□ 1.94
LIME1-207ENST00000489212 MAP3K2Q9Y2U5 619 aa27.2■■□□□ 1.94
LIME1-207ENST00000489212 KDM2BQ8NHM5 1336 aa27.19■■□□□ 1.94
LIME1-207ENST00000489212 PI4KAP2A4QPH2 592 aa27.19■■□□□ 1.94
LIME1-207ENST00000489212 PPEF1O14829 653 aaPredicted RBP27.19■■□□□ 1.94
LIME1-207ENST00000489212 KSR2Q6VAB6 950 aa27.19■■□□□ 1.94
LIME1-207ENST00000489212 PI4KAP1Q8N8J0 262 aa27.19■■□□□ 1.94
LIME1-207ENST00000489212 MYH16Q9H6N6 1097 aa27.19■■□□□ 1.94
LIME1-207ENST00000489212 ZNF277Q9NRM2 450 aaPredicted RBP27.19■■□□□ 1.94
LIME1-207ENST00000489212 GLTPD2A6NH11 291 aa27.18■■□□□ 1.94
LIME1-207ENST00000489212 TAF1P21675 1872 aa27.17■■□□□ 1.94
LIME1-207ENST00000489212 CC2D2BQ6DHV5 1058 aa27.16■■□□□ 1.94
LIME1-207ENST00000489212 ZBTB38Q8NAP3 1195 aaPredicted RBP27.16■■□□□ 1.94
LIME1-207ENST00000489212 CCDC191Q8NCU4 936 aa27.16■■□□□ 1.94
LIME1-207ENST00000489212 RRAGCQ9HB90 399 aa27.16■■□□□ 1.94
LIME1-207ENST00000489212 CACNA1FO60840 1977 aa27.16■■□□□ 1.94
LIME1-207ENST00000489212 IRS4O14654 1257 aaPredicted RBP27.15■■□□□ 1.94
LIME1-207ENST00000489212 IGKV5-2P06315 115 aa27.15■■□□□ 1.94
LIME1-207ENST00000489212 FLIIQ13045 1269 aa27.15■■□□□ 1.94
LIME1-207ENST00000489212 PSMD1Q99460 953 aa27.15■■□□□ 1.94
LIME1-207ENST00000489212 SF3B3Q15393 1217 aaKnown RBP27.14■■□□□ 1.94
LIME1-207ENST00000489212 DDX46Q7L014 1031 aaKnown RBP27.14■■□□□ 1.94
LIME1-207ENST00000489212 JARID2Q92833 1246 aaPredicted RBP27.14■■□□□ 1.94
LIME1-207ENST00000489212 CWC25Q9NXE8 425 aaPredicted RBP27.14■■□□□ 1.94
LIME1-207ENST00000489212 ATP6V0A2Q9Y487 856 aa27.14■■□□□ 1.94
LIME1-207ENST00000489212 COL4A1P02462 1669 aa27.12■■□□□ 1.93
LIME1-207ENST00000489212 BBOX1O75936 387 aa27.12■■□□□ 1.93
LIME1-207ENST00000489212 PCCAP05165 728 aaPredicted RBP27.12■■□□□ 1.93
LIME1-207ENST00000489212 IARSP41252 1262 aaKnown RBP27.12■■□□□ 1.93
LIME1-207ENST00000489212 GRAPQ13588 217 aa27.12■■□□□ 1.93
LIME1-207ENST00000489212 GRAPLQ8TC17 118 aaPredicted RBP27.12■■□□□ 1.93
LIME1-207ENST00000489212 TOMM70O94826 608 aa27.1■■□□□ 1.93
LIME1-207ENST00000489212 CWF19L2Q2TBE0 894 aaKnown RBP27.1■■□□□ 1.93
LIME1-207ENST00000489212 GRIPAP1Q4V328 841 aa27.1■■□□□ 1.93
LIME1-207ENST00000489212 COL4A5P29400 1685 aa27.09■■□□□ 1.93
LIME1-207ENST00000489212 POTECB2RU33 542 aa27.09■■□□□ 1.93
LIME1-207ENST00000489212 FKBP5Q13451 457 aaPredicted RBP27.09■■□□□ 1.93
LIME1-207ENST00000489212 DPY19L2Q6NUT2 758 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms