RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PDZRN3Q9UPQ7 1066 aa17.97■□□□□ 0.47
SYNE1-226ENST00000488376 SLX4Q8IY92 1834 aa17.97■□□□□ 0.47
SYNE1-226ENST00000488376 ANKRD36CQ5JPF3 1778 aa17.96■□□□□ 0.47
SYNE1-226ENST00000488376 NPR1P16066 1061 aa17.96■□□□□ 0.47
SYNE1-226ENST00000488376 EXOSC9Q06265 439 aaKnown RBP17.96■□□□□ 0.47
SYNE1-226ENST00000488376 CRY2Q49AN0 593 aa17.96■□□□□ 0.47
SYNE1-226ENST00000488376 CCDC30Q5VVM6 783 aa17.96■□□□□ 0.47
SYNE1-226ENST00000488376 CNKSR1Q969H4 720 aa17.96■□□□□ 0.47
SYNE1-226ENST00000488376 UTP14AQ9BVJ6 771 aaKnown RBP17.96■□□□□ 0.47
SYNE1-226ENST00000488376 G2E3Q7L622 706 aa17.95■□□□□ 0.46
SYNE1-226ENST00000488376 PPP1R42Q7Z4L9 355 aa17.95■□□□□ 0.46
SYNE1-226ENST00000488376 C7orf43Q8WVR3 580 aa17.95■□□□□ 0.46
SYNE1-226ENST00000488376 ISCA1Q9BUE6 129 aa17.95■□□□□ 0.46
SYNE1-226ENST00000488376 RNF181Q9P0P0 153 aa17.95■□□□□ 0.46
SYNE1-226ENST00000488376 RIC1Q4ADV7 1423 aa17.95■□□□□ 0.46
SYNE1-226ENST00000488376 ARFGEF2Q9Y6D5 1785 aa17.94■□□□□ 0.46
SYNE1-226ENST00000488376 CCER2I3L3R5 266 aa17.94■□□□□ 0.46
SYNE1-226ENST00000488376 HCLS1P14317 486 aaPredicted RBP17.94■□□□□ 0.46
SYNE1-226ENST00000488376 HSP90AB3PQ58FF7 597 aa17.94■□□□□ 0.46
SYNE1-226ENST00000488376 CACNA1SQ13698 1873 aa17.94■□□□□ 0.46
SYNE1-226ENST00000488376 MIER1Q8N108 512 aa17.93■□□□□ 0.46
SYNE1-226ENST00000488376 TRMT112Q9UI30 125 aaKnown RBP17.93■□□□□ 0.46
SYNE1-226ENST00000488376 VAMP4O75379 141 aa17.92■□□□□ 0.46
SYNE1-226ENST00000488376 GOLGA2Q08379 1002 aa17.92■□□□□ 0.46
SYNE1-226ENST00000488376 SLC10A5Q5PT55 438 aa17.92■□□□□ 0.46
SYNE1-226ENST00000488376 DIEXFQ68CQ4 756 aaKnown RBP17.92■□□□□ 0.46
SYNE1-226ENST00000488376 RIC3Q7Z5B4 369 aa17.92■□□□□ 0.46
SYNE1-226ENST00000488376 MYD88Q99836 296 aa17.92■□□□□ 0.46
SYNE1-226ENST00000488376 RTL5Q5HYW3 569 aaPredicted RBP17.91■□□□□ 0.46
SYNE1-226ENST00000488376 FAM89AQ96GI7 184 aa17.91■□□□□ 0.46
SYNE1-226ENST00000488376 SLC4A2P04920 1241 aa17.9■□□□□ 0.46
SYNE1-226ENST00000488376 LMNB1P20700 586 aa17.9■□□□□ 0.46
SYNE1-226ENST00000488376 HOXA10P31260 410 aaPredicted RBP17.9■□□□□ 0.46
SYNE1-226ENST00000488376 JARID2Q92833 1246 aaPredicted RBP17.9■□□□□ 0.46
SYNE1-226ENST00000488376 RPGRQ92834 1020 aaKnown RBP17.9■□□□□ 0.46
SYNE1-226ENST00000488376 STK31Q9BXU1 1019 aa17.9■□□□□ 0.46
SYNE1-226ENST00000488376 GPBP1L1Q9HC44 474 aaPredicted RBP17.9■□□□□ 0.46
SYNE1-226ENST00000488376 MAP3K2Q9Y2U5 619 aa17.9■□□□□ 0.46
SYNE1-226ENST00000488376 SH3TC1Q8TE82 1336 aa17.9■□□□□ 0.46
SYNE1-226ENST00000488376 SNED1Q8TER0 1413 aa17.89■□□□□ 0.46
SYNE1-226ENST00000488376 SBF1O95248 1867 aa17.89■□□□□ 0.45
SYNE1-226ENST00000488376 MYH16Q9H6N6 1097 aa17.89■□□□□ 0.45
SYNE1-226ENST00000488376 COL4A1P02462 1669 aa17.88■□□□□ 0.45
SYNE1-226ENST00000488376 PI4KAP2A4QPH2 592 aa17.88■□□□□ 0.45
SYNE1-226ENST00000488376 TRIM28Q13263 835 aaKnown RBP17.88■□□□□ 0.45
SYNE1-226ENST00000488376 PI4KAP1Q8N8J0 262 aa17.88■□□□□ 0.45
SYNE1-226ENST00000488376 NLRP3Q96P20 1036 aa17.88■□□□□ 0.45
SYNE1-226ENST00000488376 METTL22Q9BUU2 404 aaPredicted RBP17.88■□□□□ 0.45
SYNE1-226ENST00000488376 RNF123Q5XPI4 1314 aa17.88■□□□□ 0.45
SYNE1-226ENST00000488376 FER1L6Q2WGJ9 1857 aa17.88■□□□□ 0.45
SYNE1-226ENST00000488376 LAMB2P55268 1798 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 IGKV5-2P06315 115 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 ALDH1B1P30837 517 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 CCDC93Q567U6 631 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 KSR2Q6VAB6 950 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 CDCA7LQ96GN5 454 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 RBM17Q96I25 401 aaKnown RBP17.87■□□□□ 0.45
SYNE1-226ENST00000488376 TAOK3Q9H2K8 898 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 NMRK2Q9NPI5 230 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 ABCC4O15439 1325 aa17.87■□□□□ 0.45
SYNE1-226ENST00000488376 DDX60Q8IY21 1712 aaKnown RBP17.86■□□□□ 0.45
SYNE1-226ENST00000488376 DDX58O95786 925 aaKnown RBP17.86■□□□□ 0.45
SYNE1-226ENST00000488376 FLIIQ13045 1269 aa17.86■□□□□ 0.45
SYNE1-226ENST00000488376 CRAMP1Q96RY5 1269 aa17.86■□□□□ 0.45
SYNE1-226ENST00000488376 LTBP3Q9NS15 1303 aa17.86■□□□□ 0.45
SYNE1-226ENST00000488376 KIF3CO14782 793 aa17.85■□□□□ 0.45
SYNE1-226ENST00000488376 PPEF1O14829 653 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-226ENST00000488376 CWF19L2Q2TBE0 894 aaKnown RBP17.85■□□□□ 0.45
SYNE1-226ENST00000488376 SOGA3Q5TF21 947 aa17.85■□□□□ 0.45
SYNE1-226ENST00000488376 TIAM2Q8IVF5 1701 aa17.85■□□□□ 0.45
SYNE1-226ENST00000488376 ZNF277Q9NRM2 450 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-226ENST00000488376 IRS4O14654 1257 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-226ENST00000488376 FKBP4Q02790 459 aaKnown RBP eCLIP17.84■□□□□ 0.45
SYNE1-226ENST00000488376 ZBTB38Q8NAP3 1195 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-226ENST00000488376 CHMP4AQ9BY43 222 aa17.84■□□□□ 0.45
SYNE1-226ENST00000488376 SLFN5Q08AF3 891 aa17.83■□□□□ 0.44
SYNE1-226ENST00000488376 CCDC191Q8NCU4 936 aa17.83■□□□□ 0.44
SYNE1-226ENST00000488376 CWC25Q9NXE8 425 aaPredicted RBP17.83■□□□□ 0.44
SYNE1-226ENST00000488376 F6X3S4 739 aa17.82■□□□□ 0.44
SYNE1-226ENST00000488376 C1QTNF8P60827 252 aa17.82■□□□□ 0.44
SYNE1-226ENST00000488376 FKBP5Q13451 457 aaPredicted RBP17.82■□□□□ 0.44
SYNE1-226ENST00000488376 COL4A5P29400 1685 aa17.82■□□□□ 0.44
SYNE1-226ENST00000488376 NEURL1BA8MQ27 555 aa17.81■□□□□ 0.44
SYNE1-226ENST00000488376 E9PSI1 815 aa17.81■□□□□ 0.44
SYNE1-226ENST00000488376 PCCAP05165 728 aaPredicted RBP17.81■□□□□ 0.44
SYNE1-226ENST00000488376 RTKN2Q8IZC4 609 aa17.81■□□□□ 0.44
SYNE1-226ENST00000488376 TAF1P21675 1872 aa17.8■□□□□ 0.44
SYNE1-226ENST00000488376 CCDC88AQ3V6T2 1871 aa17.8■□□□□ 0.44
SYNE1-226ENST00000488376 GRAPQ13588 217 aa17.8■□□□□ 0.44
SYNE1-226ENST00000488376 SF3B3Q15393 1217 aaKnown RBP17.8■□□□□ 0.44
SYNE1-226ENST00000488376 DDX46Q7L014 1031 aaKnown RBP17.8■□□□□ 0.44
SYNE1-226ENST00000488376 GRAPLQ8TC17 118 aaPredicted RBP17.8■□□□□ 0.44
SYNE1-226ENST00000488376 CELF1Q92879 486 aaKnown RBP17.8■□□□□ 0.44
SYNE1-226ENST00000488376 ATP6V0A2Q9Y487 856 aa17.8■□□□□ 0.44
SYNE1-226ENST00000488376 ZC3H4Q9UPT8 1303 aaKnown RBP17.79■□□□□ 0.44
SYNE1-226ENST00000488376 TRMT2AQ8IZ69 625 aaKnown RBP17.79■□□□□ 0.44
SYNE1-226ENST00000488376 DNAAF4Q8WXU2 420 aa17.79■□□□□ 0.44
SYNE1-226ENST00000488376 CCDC85AQ96PX6 553 aaPredicted RBP17.79■□□□□ 0.44
SYNE1-226ENST00000488376 RRAGCQ9HB90 399 aa17.79■□□□□ 0.44
SYNE1-226ENST00000488376 SEC31BQ9NQW1 1179 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms