RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 HTATSF1O43719 755 aaKnown RBP20.52■□□□□ 0.88
MCF2L-228ENST00000487354 U2AF1L5P0DN76 240 aaPredicted RBP20.52■□□□□ 0.88
MCF2L-228ENST00000487354 HOXA10P31260 410 aaPredicted RBP20.52■□□□□ 0.88
MCF2L-228ENST00000487354 U2AF1Q01081 240 aaKnown RBP eCLIP20.52■□□□□ 0.88
MCF2L-228ENST00000487354 RTF1Q92541 710 aaKnown RBP20.52■□□□□ 0.88
MCF2L-228ENST00000487354 CFAP53Q96M91 514 aa20.52■□□□□ 0.88
MCF2L-228ENST00000487354 DDX21Q9NR30 783 aaKnown RBP eCLIP20.52■□□□□ 0.88
MCF2L-228ENST00000487354 PPP2R1AP30153 589 aa20.51■□□□□ 0.87
MCF2L-228ENST00000487354 TTLL7Q6ZT98 887 aa20.51■□□□□ 0.87
MCF2L-228ENST00000487354 C3orf67Q6ZVT6 689 aa20.51■□□□□ 0.87
MCF2L-228ENST00000487354 ANKRD36CQ5JPF3 1778 aa20.51■□□□□ 0.87
MCF2L-228ENST00000487354 MAP3K15Q6ZN16 1313 aa20.51■□□□□ 0.87
MCF2L-228ENST00000487354 ERVV-1B6SEH8 477 aa20.5■□□□□ 0.87
MCF2L-228ENST00000487354 EPS15P42566 896 aa20.5■□□□□ 0.87
MCF2L-228ENST00000487354 ABHD8Q96I13 439 aa20.5■□□□□ 0.87
MCF2L-228ENST00000487354 TAF7Q15545 349 aaPredicted RBP20.49■□□□□ 0.87
MCF2L-228ENST00000487354 CST9Q5W186 159 aa20.48■□□□□ 0.87
MCF2L-228ENST00000487354 CC2D2BQ6DHV5 1058 aa20.48■□□□□ 0.87
MCF2L-228ENST00000487354 JDP2Q8WYK2 163 aa20.48■□□□□ 0.87
MCF2L-228ENST00000487354 NYXQ9GZU5 481 aa20.48■□□□□ 0.87
MCF2L-228ENST00000487354 ABT1Q9ULW3 272 aaKnown RBP20.48■□□□□ 0.87
MCF2L-228ENST00000487354 NUDCQ9Y266 331 aa20.48■□□□□ 0.87
MCF2L-228ENST00000487354 GJA3Q9Y6H8 435 aa20.48■□□□□ 0.87
MCF2L-228ENST00000487354 NTSR2O95665 410 aa20.47■□□□□ 0.87
MCF2L-228ENST00000487354 GTF2E1P29083 439 aaPredicted RBP20.47■□□□□ 0.87
MCF2L-228ENST00000487354 EIF6P56537 245 aaKnown RBP20.47■□□□□ 0.87
MCF2L-228ENST00000487354 MAP2K1Q02750 393 aaPredicted RBP20.47■□□□□ 0.87
MCF2L-228ENST00000487354 SUSD4Q5VX71 490 aa20.47■□□□□ 0.87
MCF2L-228ENST00000487354 TAF1P21675 1872 aa20.46■□□□□ 0.87
MCF2L-228ENST00000487354 TRAF5O00463 557 aa20.46■□□□□ 0.87
MCF2L-228ENST00000487354 GPTP24298 496 aa20.46■□□□□ 0.87
MCF2L-228ENST00000487354 ZNF34Q8IZ26 560 aa20.46■□□□□ 0.87
MCF2L-228ENST00000487354 NGEFQ8N5V2 710 aa20.46■□□□□ 0.87
MCF2L-228ENST00000487354 CAPNS2Q96L46 248 aa20.46■□□□□ 0.87
MCF2L-228ENST00000487354 EIF4A1P60842 406 aaKnown RBP20.45■□□□□ 0.86
MCF2L-228ENST00000487354 CYP4F22Q6NT55 531 aa20.45■□□□□ 0.86
MCF2L-228ENST00000487354 LARGE2Q8N3Y3 721 aa20.45■□□□□ 0.86
MCF2L-228ENST00000487354 CRAMP1Q96RY5 1269 aa20.45■□□□□ 0.86
MCF2L-228ENST00000487354 DUOX1Q9NRD9 1551 aa20.44■□□□□ 0.86
MCF2L-228ENST00000487354 PPEF1O14829 653 aaPredicted RBP20.44■□□□□ 0.86
MCF2L-228ENST00000487354 LRP10Q7Z4F1 713 aa20.44■□□□□ 0.86
MCF2L-228ENST00000487354 RPGRQ92834 1020 aaKnown RBP20.44■□□□□ 0.86
MCF2L-228ENST00000487354 ZBTB3Q9H5J0 574 aa20.44■□□□□ 0.86
MCF2L-228ENST00000487354 LRRC37AA6NMS7 1700 aa20.44■□□□□ 0.86
MCF2L-228ENST00000487354 SLC34A2O95436 690 aa20.43■□□□□ 0.86
MCF2L-228ENST00000487354 LMOD1P29536 600 aaPredicted RBP20.43■□□□□ 0.86
MCF2L-228ENST00000487354 FAM161AQ3B820 660 aa20.43■□□□□ 0.86
MCF2L-228ENST00000487354 USP50Q70EL3 339 aaPredicted RBP20.43■□□□□ 0.86
MCF2L-228ENST00000487354 TLL2Q9Y6L7 1015 aa20.43■□□□□ 0.86
MCF2L-228ENST00000487354 GRIPAP1Q4V328 841 aa20.42■□□□□ 0.86
MCF2L-228ENST00000487354 PLEKHF1Q96S99 279 aa20.42■□□□□ 0.86
MCF2L-228ENST00000487354 THUMPD2Q9BTF0 503 aaKnown RBP20.42■□□□□ 0.86
MCF2L-228ENST00000487354 RRP7AQ9Y3A4 280 aaKnown RBP20.42■□□□□ 0.86
MCF2L-228ENST00000487354 CASP8AP2Q9UKL3 1982 aa20.42■□□□□ 0.86
MCF2L-228ENST00000487354 TCERG1O14776 1098 aaKnown RBP20.41■□□□□ 0.86
MCF2L-228ENST00000487354 MYL6BP14649 208 aa20.41■□□□□ 0.86
MCF2L-228ENST00000487354 AOC3Q16853 763 aa20.41■□□□□ 0.86
MCF2L-228ENST00000487354 KIF6Q6ZMV9 814 aa20.41■□□□□ 0.86
MCF2L-228ENST00000487354 RBM17Q96I25 401 aaKnown RBP20.41■□□□□ 0.86
MCF2L-228ENST00000487354 GPRC5DQ9NZD1 345 aa20.41■□□□□ 0.86
MCF2L-228ENST00000487354 ABCC4O15439 1325 aa20.4■□□□□ 0.86
MCF2L-228ENST00000487354 AOC2O75106 756 aa20.4■□□□□ 0.86
MCF2L-228ENST00000487354 GIGYF2Q6Y7W6 1299 aaKnown RBP20.4■□□□□ 0.86
MCF2L-228ENST00000487354 DDX60Q8IY21 1712 aaKnown RBP20.4■□□□□ 0.86
MCF2L-228ENST00000487354 NIM1KQ8IY84 436 aa20.4■□□□□ 0.86
MCF2L-228ENST00000487354 GPR101Q96P66 508 aaPredicted RBP20.4■□□□□ 0.86
MCF2L-228ENST00000487354 PPIP5K2O43314 1243 aa20.39■□□□□ 0.85
MCF2L-228ENST00000487354 PNISRQ8TF01 805 aaKnown RBP20.39■□□□□ 0.85
MCF2L-228ENST00000487354 RTFDC1Q9BY42 306 aaPredicted RBP20.39■□□□□ 0.85
MCF2L-228ENST00000487354 TSKSQ9UJT2 592 aa20.39■□□□□ 0.85
MCF2L-228ENST00000487354 ATP6V0A2Q9Y487 856 aa20.39■□□□□ 0.85
MCF2L-228ENST00000487354 COL4A1P02462 1669 aa20.38■□□□□ 0.85
MCF2L-228ENST00000487354 ECE1P42892 770 aa20.38■□□□□ 0.85
MCF2L-228ENST00000487354 CXCL9Q07325 125 aa20.38■□□□□ 0.85
MCF2L-228ENST00000487354 PDIA6Q15084 440 aa20.38■□□□□ 0.85
MCF2L-228ENST00000487354 ADARB2Q9NS39 739 aaKnown RBP20.38■□□□□ 0.85
MCF2L-228ENST00000487354 TNRC18O15417 2968 aaPredicted RBP20.37■□□□□ 0.85
MCF2L-228ENST00000487354 ERBB4Q15303 1308 aa20.37■□□□□ 0.85
MCF2L-228ENST00000487354 GRM1Q13255 1194 aa20.37■□□□□ 0.85
MCF2L-228ENST00000487354 SLC10A5Q5PT55 438 aa20.37■□□□□ 0.85
MCF2L-228ENST00000487354 PAXIP1Q6ZW49 1069 aaPredicted RBP20.37■□□□□ 0.85
MCF2L-228ENST00000487354 SAPCD2Q86UD0 394 aa20.37■□□□□ 0.85
MCF2L-228ENST00000487354 RGS19P49795 217 aa20.36■□□□□ 0.85
MCF2L-228ENST00000487354 GMPSP49915 693 aaPredicted RBP20.36■□□□□ 0.85
MCF2L-228ENST00000487354 PROSER3Q2NL68 480 aa20.36■□□□□ 0.85
MCF2L-228ENST00000487354 PGAP2Q9UHJ9 254 aa20.36■□□□□ 0.85
MCF2L-228ENST00000487354 POLR2AP24928 1970 aaKnown RBP20.35■□□□□ 0.85
MCF2L-228ENST00000487354 HIRAP54198 1017 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-228ENST00000487354 NFE2L2Q16236 605 aa20.35■□□□□ 0.85
MCF2L-228ENST00000487354 GLIS2Q9BZE0 524 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-228ENST00000487354 VPS33BQ9H267 617 aa20.35■□□□□ 0.85
MCF2L-228ENST00000487354 ZNRF3Q9ULT6 936 aa20.35■□□□□ 0.85
MCF2L-228ENST00000487354 MAP2K2P36507 400 aa20.34■□□□□ 0.85
MCF2L-228ENST00000487354 PARP10Q53GL7 1025 aa20.34■□□□□ 0.85
MCF2L-228ENST00000487354 CDHR2Q9BYE9 1310 aa20.33■□□□□ 0.85
MCF2L-228ENST00000487354 SHTN1A0MZ66 631 aa20.33■□□□□ 0.85
MCF2L-228ENST00000487354 CELF2O95319 508 aaKnown RBP20.33■□□□□ 0.85
MCF2L-228ENST00000487354 PPP1R42Q7Z4L9 355 aa20.33■□□□□ 0.85
MCF2L-228ENST00000487354 TRPM4Q8TD43 1214 aa20.33■□□□□ 0.85
MCF2L-228ENST00000487354 NLRP3Q96P20 1036 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms