RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 CNTROBQ8N137 903 aa25.78■■□□□ 1.72
SMPDL3A-202ENST00000487215 PRDM10Q9NQV6 1147 aa25.78■■□□□ 1.72
SMPDL3A-202ENST00000487215 NUP98P52948 1817 aa25.78■■□□□ 1.72
SMPDL3A-202ENST00000487215 IBTKQ9P2D0 1353 aaPredicted RBP25.78■■□□□ 1.72
SMPDL3A-202ENST00000487215 DLG5Q8TDM6 1919 aa25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 NEFMP07197 916 aa25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 GPTP24298 496 aa25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 HOXA10P31260 410 aaPredicted RBP25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 RPGRQ92834 1020 aaKnown RBP25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 AIDAQ96BJ3 306 aa25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 ZBTB3Q9H5J0 574 aa25.77■■□□□ 1.72
SMPDL3A-202ENST00000487215 MYL6BP14649 208 aa25.76■■□□□ 1.71
SMPDL3A-202ENST00000487215 CTCFP49711 727 aaPredicted RBP25.76■■□□□ 1.71
SMPDL3A-202ENST00000487215 PLEKHF1Q96S99 279 aa25.76■■□□□ 1.71
SMPDL3A-202ENST00000487215 THUMPD2Q9BTF0 503 aaKnown RBP25.76■■□□□ 1.71
SMPDL3A-202ENST00000487215 RASSF10A6NK89 507 aa25.75■■□□□ 1.71
SMPDL3A-202ENST00000487215 EIF6P56537 245 aaKnown RBP25.75■■□□□ 1.71
SMPDL3A-202ENST00000487215 SUSD4Q5VX71 490 aa25.75■■□□□ 1.71
SMPDL3A-202ENST00000487215 SLC51AQ86UW1 340 aa25.75■■□□□ 1.71
SMPDL3A-202ENST00000487215 GJA3Q9Y6H8 435 aa25.75■■□□□ 1.71
SMPDL3A-202ENST00000487215 LTBP1Q14766 1721 aa25.74■■□□□ 1.71
SMPDL3A-202ENST00000487215 WBP1LQ9NX94 342 aa25.74■■□□□ 1.71
SMPDL3A-202ENST00000487215 NFE2L2Q16236 605 aa25.73■■□□□ 1.71
SMPDL3A-202ENST00000487215 DEFB115Q30KQ5 88 aa25.73■■□□□ 1.71
SMPDL3A-202ENST00000487215 ZNF34Q8IZ26 560 aa25.73■■□□□ 1.71
SMPDL3A-202ENST00000487215 PPEF1O14829 653 aaPredicted RBP25.72■■□□□ 1.71
SMPDL3A-202ENST00000487215 NTSR2O95665 410 aa25.72■■□□□ 1.71
SMPDL3A-202ENST00000487215 GRIPAP1Q4V328 841 aa25.72■■□□□ 1.71
SMPDL3A-202ENST00000487215 LARGE2Q8N3Y3 721 aa25.72■■□□□ 1.71
SMPDL3A-202ENST00000487215 RBM17Q96I25 401 aaKnown RBP25.72■■□□□ 1.71
SMPDL3A-202ENST00000487215 CRAMP1Q96RY5 1269 aa25.72■■□□□ 1.71
SMPDL3A-202ENST00000487215 LMOD1P29536 600 aaPredicted RBP25.71■■□□□ 1.71
SMPDL3A-202ENST00000487215 SCNN1DP51172 638 aa25.71■■□□□ 1.71
SMPDL3A-202ENST00000487215 C3orf67Q6ZVT6 689 aa25.71■■□□□ 1.71
SMPDL3A-202ENST00000487215 ERBB4Q15303 1308 aa25.7■■□□□ 1.71
SMPDL3A-202ENST00000487215 TCERG1O14776 1098 aaKnown RBP25.7■■□□□ 1.7
SMPDL3A-202ENST00000487215 GIGYF2Q6Y7W6 1299 aaKnown RBP25.7■■□□□ 1.7
SMPDL3A-202ENST00000487215 DDX21Q9NR30 783 aaKnown RBP eCLIP25.7■■□□□ 1.7
SMPDL3A-202ENST00000487215 ABT1Q9ULW3 272 aaKnown RBP25.7■■□□□ 1.7
SMPDL3A-202ENST00000487215 EPS15P42566 896 aa25.69■■□□□ 1.7
SMPDL3A-202ENST00000487215 LBX1P52954 281 aa25.69■■□□□ 1.7
SMPDL3A-202ENST00000487215 WDR33Q9C0J8 1336 aaKnown RBP25.68■■□□□ 1.7
SMPDL3A-202ENST00000487215 PPP1R42Q7Z4L9 355 aa25.67■■□□□ 1.7
SMPDL3A-202ENST00000487215 NIM1KQ8IY84 436 aa25.67■■□□□ 1.7
SMPDL3A-202ENST00000487215 MAPK8IP3Q9UPT6 1336 aa25.66■■□□□ 1.7
SMPDL3A-202ENST00000487215 FMR1Q06787 632 aaKnown RBP eCLIP25.66■■□□□ 1.7
SMPDL3A-202ENST00000487215 PARP10Q53GL7 1025 aa25.66■■□□□ 1.7
SMPDL3A-202ENST00000487215 LRP10Q7Z4F1 713 aa25.66■■□□□ 1.7
SMPDL3A-202ENST00000487215 PPIP5K2O43314 1243 aa25.65■■□□□ 1.7
SMPDL3A-202ENST00000487215 HSPA8P11142 646 aaKnown RBP25.65■■□□□ 1.7
SMPDL3A-202ENST00000487215 NLRP3Q96P20 1036 aa25.65■■□□□ 1.7
SMPDL3A-202ENST00000487215 MAP2K1Q02750 393 aaPredicted RBP25.64■■□□□ 1.7
SMPDL3A-202ENST00000487215 PDIA6Q15084 440 aa25.64■■□□□ 1.7
SMPDL3A-202ENST00000487215 USP50Q70EL3 339 aaPredicted RBP25.64■■□□□ 1.7
SMPDL3A-202ENST00000487215 TSPYL4Q9UJ04 414 aa25.64■■□□□ 1.7
SMPDL3A-202ENST00000487215 AOC3Q16853 763 aa25.63■■□□□ 1.69
SMPDL3A-202ENST00000487215 PNNQ9H307 717 aaKnown RBP25.63■■□□□ 1.69
SMPDL3A-202ENST00000487215 ATP6V0A2Q9Y487 856 aa25.63■■□□□ 1.69
SMPDL3A-202ENST00000487215 THSD7BQ9C0I4 1608 aa25.63■■□□□ 1.69
SMPDL3A-202ENST00000487215 SLC10A5Q5PT55 438 aa25.62■■□□□ 1.69
SMPDL3A-202ENST00000487215 UTP14AQ9BVJ6 771 aaKnown RBP25.62■■□□□ 1.69
SMPDL3A-202ENST00000487215 ABCC4O15439 1325 aa25.62■■□□□ 1.69
SMPDL3A-202ENST00000487215 TRAF5O00463 557 aa25.61■■□□□ 1.69
SMPDL3A-202ENST00000487215 EIF2S2P20042 333 aaKnown RBP25.61■■□□□ 1.69
SMPDL3A-202ENST00000487215 PROSER3Q2NL68 480 aa25.61■■□□□ 1.69
SMPDL3A-202ENST00000487215 TMX4Q9H1E5 349 aaPredicted RBP25.61■■□□□ 1.69
SMPDL3A-202ENST00000487215 ANXA1P04083 346 aa25.6■■□□□ 1.69
SMPDL3A-202ENST00000487215 CST9Q5W186 159 aa25.6■■□□□ 1.69
SMPDL3A-202ENST00000487215 CAPNS2Q96L46 248 aa25.6■■□□□ 1.69
SMPDL3A-202ENST00000487215 VPS33BQ9H267 617 aa25.6■■□□□ 1.69
SMPDL3A-202ENST00000487215 GPRC5DQ9NZD1 345 aa25.6■■□□□ 1.69
SMPDL3A-202ENST00000487215 PAXIP1Q6ZW49 1069 aaPredicted RBP25.59■■□□□ 1.69
SMPDL3A-202ENST00000487215 ADARB2Q9NS39 739 aaKnown RBP25.59■■□□□ 1.69
SMPDL3A-202ENST00000487215 ECE1P42892 770 aa25.58■■□□□ 1.69
SMPDL3A-202ENST00000487215 CXCL9Q07325 125 aa25.58■■□□□ 1.69
SMPDL3A-202ENST00000487215 CYP4F22Q6NT55 531 aa25.58■■□□□ 1.69
SMPDL3A-202ENST00000487215 SUPT20HQ8NEM7 779 aa25.58■■□□□ 1.69
SMPDL3A-202ENST00000487215 RTFDC1Q9BY42 306 aaPredicted RBP25.58■■□□□ 1.69
SMPDL3A-202ENST00000487215 ZNRF3Q9ULT6 936 aa25.58■■□□□ 1.69
SMPDL3A-202ENST00000487215 RIPK4P57078 832 aa25.56■■□□□ 1.68
SMPDL3A-202ENST00000487215 GRM1Q13255 1194 aa25.56■■□□□ 1.68
SMPDL3A-202ENST00000487215 TLL2Q9Y6L7 1015 aa25.56■■□□□ 1.68
SMPDL3A-202ENST00000487215 ANKRD36CQ5JPF3 1778 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 BBOX1O75936 387 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 GMPSP49915 693 aaPredicted RBP25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 DPP8Q6V1X1 898 aaPredicted RBP25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 NLRP10Q86W26 655 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 SP8Q8IXZ3 490 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 ABHD8Q96I13 439 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 GPR101Q96P66 508 aaPredicted RBP25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 BABAM1Q9NWV8 329 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 TRPM7Q96QT4 1865 aa25.55■■□□□ 1.68
SMPDL3A-202ENST00000487215 LAMB2P55268 1798 aa25.54■■□□□ 1.68
SMPDL3A-202ENST00000487215 HCLS1P14317 486 aaPredicted RBP25.54■■□□□ 1.68
SMPDL3A-202ENST00000487215 HSP90AB3PQ58FF7 597 aa25.54■■□□□ 1.68
SMPDL3A-202ENST00000487215 COPS6Q7L5N1 327 aa25.54■■□□□ 1.68
SMPDL3A-202ENST00000487215 KIAA2012Q0VF49 1180 aa25.53■■□□□ 1.68
SMPDL3A-202ENST00000487215 AIMP1Q12904 312 aaKnown RBP25.53■■□□□ 1.68
SMPDL3A-202ENST00000487215 MPNDQ8N594 471 aa25.53■■□□□ 1.68
SMPDL3A-202ENST00000487215 XAGE3Q8WTP9 111 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms