RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 AVENQ9NQS1 362 aaPredicted RBP8.03□□□□□ -1.12
VPS41-213ENST00000485955 CXXC1Q9P0U4 656 aaPredicted RBP8.03□□□□□ -1.12
VPS41-213ENST00000485955 TIMELESSQ9UNS1 1208 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 KCNH4Q9UQ05 1017 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 TGFBR3LH3BV60 316 aa8.02□□□□□ -1.13
VPS41-213ENST00000485955 SPEM2Q0P670 501 aa8.02□□□□□ -1.13
VPS41-213ENST00000485955 HIF1AQ16665 826 aa8.02□□□□□ -1.13
VPS41-213ENST00000485955 C11orf91Q3C1V1 193 aa8.02□□□□□ -1.13
VPS41-213ENST00000485955 IER5Q5VY09 327 aa8.02□□□□□ -1.13
VPS41-213ENST00000485955 SCARF2Q96GP6 870 aaPredicted RBP8.02□□□□□ -1.13
VPS41-213ENST00000485955 RASSF7Q02833 373 aa8.01□□□□□ -1.13
VPS41-213ENST00000485955 CLP1Q92989 425 aaKnown RBP8.01□□□□□ -1.13
VPS41-213ENST00000485955 MKNK1Q9BUB5 465 aa8.01□□□□□ -1.13
VPS41-213ENST00000485955 INPP5BP32019 993 aa8□□□□□ -1.13
VPS41-213ENST00000485955 NAA30Q147X3 362 aaPredicted RBP8□□□□□ -1.13
VPS41-213ENST00000485955 BEND7Q8N7W2 519 aaPredicted RBP8□□□□□ -1.13
VPS41-213ENST00000485955 MDFIQ99750 246 aa8□□□□□ -1.13
VPS41-213ENST00000485955 RRAGCQ9HB90 399 aa8□□□□□ -1.13
VPS41-213ENST00000485955 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8□□□□□ -1.13
VPS41-213ENST00000485955 CARNS1A5YM72 827 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 TMEM88BA6NKF7 163 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 OPLAHO14841 1288 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 PPP1R15AO75807 674 aaPredicted RBP7.99□□□□□ -1.13
VPS41-213ENST00000485955 MICAL2O94851 1124 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 AMPD1P23109 780 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 IDH3AP50213 366 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 FAM26DQ5JW98 314 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 LINC00114Q6XXX2 140 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 IFT43Q96FT9 208 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 GSX2Q9BZM3 304 aa7.99□□□□□ -1.13
VPS41-213ENST00000485955 SIN3BO75182 1162 aa7.98□□□□□ -1.13
VPS41-213ENST00000485955 SCNN1AP37088 669 aa7.98□□□□□ -1.13
VPS41-213ENST00000485955 CHSY3Q70JA7 882 aa7.98□□□□□ -1.13
VPS41-213ENST00000485955 USP20Q9Y2K6 914 aa7.98□□□□□ -1.13
VPS41-213ENST00000485955 RNF225M0QZC1 329 aaPredicted RBP7.97□□□□□ -1.13
VPS41-213ENST00000485955 GDF11O95390 407 aa7.97□□□□□ -1.13
VPS41-213ENST00000485955 ATP2B4P23634 1241 aa7.97□□□□□ -1.13
VPS41-213ENST00000485955 TMEM151AQ8N4L1 468 aa7.97□□□□□ -1.13
VPS41-213ENST00000485955 BHMTQ93088 406 aa7.97□□□□□ -1.13
VPS41-213ENST00000485955 COL26A1Q96A83 441 aa7.97□□□□□ -1.13
VPS41-213ENST00000485955 ELOA3CA0A087WX78 387 aaPredicted RBP7.96□□□□□ -1.14
VPS41-213ENST00000485955 ELOA3DA6NLF2 546 aaPredicted RBP7.96□□□□□ -1.14
VPS41-213ENST00000485955 ELOA3BQ3SY89 546 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 C16orf46Q6P387 395 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 TREML1Q86YW5 311 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 ETFBKMTQ8IXQ9 262 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 ELOA3Q8NG57 546 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 TNFRSF25Q93038 417 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 ARID3AQ99856 593 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 SEPT3Q9UH03 358 aa7.96□□□□□ -1.14
VPS41-213ENST00000485955 ADARB2-AS1A8MUL3 147 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 TNFRSF10BO14763 440 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 DGKGP49619 791 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 KANK3Q6NY19 840 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 ERICH6Q7L0X2 663 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 PODNQ7Z5L7 613 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 MKL2Q9ULH7 1088 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 STARD13Q9Y3M8 1113 aa7.95□□□□□ -1.14
VPS41-213ENST00000485955 PHF20L1A8MW92 1017 aa7.94□□□□□ -1.14
VPS41-213ENST00000485955 ARSDP51689 593 aa7.94□□□□□ -1.14
VPS41-213ENST00000485955 CCINQ13939 588 aa7.94□□□□□ -1.14
VPS41-213ENST00000485955 KCTD17Q8N5Z5 321 aa7.94□□□□□ -1.14
VPS41-213ENST00000485955 SUV39H2Q9H5I1 410 aa7.94□□□□□ -1.14
VPS41-213ENST00000485955 RTCBQ9Y3I0 505 aaKnown RBP7.94□□□□□ -1.14
VPS41-213ENST00000485955 PTCD1O75127 700 aaKnown RBP7.93□□□□□ -1.14
VPS41-213ENST00000485955 ALAS2P22557 587 aa7.93□□□□□ -1.14
VPS41-213ENST00000485955 BRD2P25440 801 aaKnown RBP7.93□□□□□ -1.14
VPS41-213ENST00000485955 TARSP26639 723 aaKnown RBP7.93□□□□□ -1.14
VPS41-213ENST00000485955 COL8A1P27658 744 aa7.93□□□□□ -1.14
VPS41-213ENST00000485955 NEUROD1Q13562 356 aa7.93□□□□□ -1.14
VPS41-213ENST00000485955 IGFLR1Q9H665 355 aa7.93□□□□□ -1.14
VPS41-213ENST00000485955 ZFATQ9P243 1243 aa7.93□□□□□ -1.14
VPS41-213ENST00000485955 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.93□□□□□ -1.14
VPS41-213ENST00000485955 ZBTB39O15060 712 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 SASH3O75995 380 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 NFKB1P19838 968 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 SSFA2P28290 1259 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 ADH7P40394 386 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 PHLDB3Q6NSJ2 640 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 KRT25Q7Z3Z0 450 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 RGL4Q8IZJ4 473 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 DCAF5Q96JK2 942 aa7.92□□□□□ -1.14
VPS41-213ENST00000485955 EPB42P16452 691 aa7.91□□□□□ -1.14
VPS41-213ENST00000485955 C8orf86Q6ZUL3 223 aa7.91□□□□□ -1.14
VPS41-213ENST00000485955 CMTR1Q8N1G2 835 aaKnown RBP7.91□□□□□ -1.14
VPS41-213ENST00000485955 PNMA5Q96PV4 448 aa7.91□□□□□ -1.14
VPS41-213ENST00000485955 KCNMB2Q9Y691 235 aa7.91□□□□□ -1.14
VPS41-213ENST00000485955 ALBP02768 609 aa7.9□□□□□ -1.14
VPS41-213ENST00000485955 TBC1D8BQ0IIM8 1120 aa7.9□□□□□ -1.14
VPS41-213ENST00000485955 COL9A3Q14050 684 aaPredicted RBP7.9□□□□□ -1.14
VPS41-213ENST00000485955 TRIM11Q96F44 468 aa7.9□□□□□ -1.14
VPS41-213ENST00000485955 UBE2OQ9C0C9 1292 aaKnown RBP7.9□□□□□ -1.14
VPS41-213ENST00000485955 EFCC1Q9HA90 598 aa7.9□□□□□ -1.14
VPS41-213ENST00000485955 STIM2Q9P246 746 aa7.9□□□□□ -1.14
VPS41-213ENST00000485955 ZBTB42B2RXF5 422 aa7.89□□□□□ -1.15
VPS41-213ENST00000485955 M0R082 166 aa7.89□□□□□ -1.15
VPS41-213ENST00000485955 GNB5O14775 395 aa7.89□□□□□ -1.15
VPS41-213ENST00000485955 ITGB2P05107 769 aa7.89□□□□□ -1.15
VPS41-213ENST00000485955 C20orf204Q6ZNR8 217 aa7.89□□□□□ -1.15
VPS41-213ENST00000485955 MICALL1Q8N3F8 863 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms