RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 A0A1B0GUL6 1792 aa7.59□□□□□ -1.2
CUX1-208ENST00000485792 TIAM2Q8IVF5 1701 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 ZNF646O15015 1829 aaPredicted RBP7.58□□□□□ -1.2
CUX1-208ENST00000485792 ST18O60284 1047 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 A1BGP04217 495 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 PDIA6Q15084 440 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 E2F4Q16254 413 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 DOK7Q18PE1 504 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 KCNV2Q8TDN2 545 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 BABAM1Q9NWV8 329 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 LRRC37AA6NMS7 1700 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 LTBP1Q14766 1721 aa7.58□□□□□ -1.2
CUX1-208ENST00000485792 COL4A5P29400 1685 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 ZNF521Q96K83 1311 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 POTEMA6NI47 508 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 ZNF853P0CG23 659 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 YBX3P16989 372 aaKnown RBP eCLIP7.57□□□□□ -1.2
CUX1-208ENST00000485792 EIF5P55010 431 aaKnown RBP7.57□□□□□ -1.2
CUX1-208ENST00000485792 EIF4A1P60842 406 aaKnown RBP7.57□□□□□ -1.2
CUX1-208ENST00000485792 TEFQ10587 303 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 CAMK2BQ13554 666 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 TAF7Q15545 349 aaPredicted RBP7.57□□□□□ -1.2
CUX1-208ENST00000485792 LCE2DQ5TA82 110 aaPredicted RBP7.57□□□□□ -1.2
CUX1-208ENST00000485792 ZNF710Q8N1W2 664 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 RUNDC1Q96C34 613 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 CCDC87Q9NVE4 849 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 ABCC12Q96J65 1359 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 SLX4Q8IY92 1834 aa7.57□□□□□ -1.2
CUX1-208ENST00000485792 FER1L6Q2WGJ9 1857 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 RIMBP2O15034 1052 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 CAMTA2O94983 1202 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 ANXA1P04083 346 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 TM4SF1P30408 202 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 POTEGQ6S5H5 508 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 PLPP6Q8IY26 295 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 AK7Q96M32 723 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 SYT17Q9BSW7 474 aa7.56□□□□□ -1.2
CUX1-208ENST00000485792 TEX13AQ9BXU3 409 aaPredicted RBP7.56□□□□□ -1.2
CUX1-208ENST00000485792 DUOX1Q9NRD9 1551 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 MYH3P11055 1940 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 BTBD11A6QL63 1104 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 POLRMTO00411 1230 aaKnown RBP7.55□□□□□ -1.2
CUX1-208ENST00000485792 CHL1O00533 1208 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 APAF1O14727 1248 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 GIGYF1O75420 1035 aaPredicted RBP7.55□□□□□ -1.2
CUX1-208ENST00000485792 KCNA3P22001 575 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 PRELPP51888 382 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 USPL1Q5W0Q7 1092 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 FMNL2Q96PY5 1086 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 ARXQ96QS3 562 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 RTCBQ9Y3I0 505 aaKnown RBP7.55□□□□□ -1.2
CUX1-208ENST00000485792 ADCY9O60503 1353 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 SPEF2Q9C093 1822 aa7.55□□□□□ -1.2
CUX1-208ENST00000485792 UBN2Q6ZU65 1347 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 MMP10P09238 476 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 IL6STP40189 918 aaPredicted RBP7.54□□□□□ -1.2
CUX1-208ENST00000485792 RIPK4P57078 832 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 NFIXQ14938 502 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 CCDC27Q2M243 656 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 TRAPPC3LQ5T215 181 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 NLGN1Q8N2Q7 840 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 TSPYL6Q8N831 410 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 RTF1Q92541 710 aaKnown RBP7.54□□□□□ -1.2
CUX1-208ENST00000485792 MBIPQ9NS73 344 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 NARFQ9UHQ1 456 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 WWC3Q9ULE0 1092 aa7.54□□□□□ -1.2
CUX1-208ENST00000485792 ATP10DQ9P241 1426 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 STARD3NLO95772 234 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 SNRPA1P09661 255 aaKnown RBP7.53□□□□□ -1.2
CUX1-208ENST00000485792 HOXB3P14651 431 aaPredicted RBP7.53□□□□□ -1.2
CUX1-208ENST00000485792 CANXP27824 592 aaKnown RBP7.53□□□□□ -1.2
CUX1-208ENST00000485792 NEUROD2Q15784 382 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 HLFQ16534 295 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 TBC1D9BQ66K14 1250 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 TTLL7Q6ZT98 887 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 TTC5Q8N0Z6 440 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 CCDC24Q8N4L8 307 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 CD2APQ9Y5K6 639 aa7.53□□□□□ -1.2
CUX1-208ENST00000485792 MAPK8IP3Q9UPT6 1336 aa7.52□□□□□ -1.2
CUX1-208ENST00000485792 LMOD3Q0VAK6 560 aa7.52□□□□□ -1.21
CUX1-208ENST00000485792 TSR2Q969E8 191 aaKnown RBP7.52□□□□□ -1.21
CUX1-208ENST00000485792 MRS2Q9HD23 443 aa7.52□□□□□ -1.21
CUX1-208ENST00000485792 TBC1D2BQ9UPU7 963 aa7.52□□□□□ -1.21
CUX1-208ENST00000485792 ARIH1Q9Y4X5 557 aaPredicted RBP7.52□□□□□ -1.21
CUX1-208ENST00000485792 ERBB4Q15303 1308 aa7.52□□□□□ -1.21
CUX1-208ENST00000485792 ANP32CO43423 234 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 NEFMP07197 916 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 POLD1P28340 1107 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 RFC4P35249 363 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 WDR43Q15061 677 aaKnown RBP eCLIP7.51□□□□□ -1.21
CUX1-208ENST00000485792 C8orf58Q8NAV2 365 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 EMILIN3Q9NT22 766 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 FANCIQ9NVI1 1328 aa7.51□□□□□ -1.21
CUX1-208ENST00000485792 HOXB7P09629 217 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 CHRNA5P30532 468 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 EMP3P54852 163 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 NBR1Q14596 966 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 CLEC4GQ6UXB4 293 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 WWC1Q8IX03 1113 aa7.5□□□□□ -1.21
CUX1-208ENST00000485792 ZNF428Q96B54 188 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms