RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 ERFEQ4G0M1 354 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 MAP1SQ66K74 1059 aaPredicted RBP6.83□□□□□ -1.32
COL17A1-206ENST00000483876 IFNL2Q8IZJ0 200 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 TMEM57Q8N5G2 664 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 STK31Q9BXU1 1019 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 LGR6Q9HBX8 967 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 DDX21Q9NR30 783 aaKnown RBP eCLIP6.83□□□□□ -1.32
COL17A1-206ENST00000483876 MIS18AQ9NYP9 233 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 C4BP0C0L5 1744 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 KAT6BQ8WYB5 2073 aa6.83□□□□□ -1.32
COL17A1-206ENST00000483876 SZT2Q5T011 3432 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 TIAM2Q8IVF5 1701 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 TOGARAM1Q9Y4F4 1720 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 GNPATO15228 680 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 CIAPIN1Q6FI81 312 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 ITPRIPQ8IWB1 547 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 PRDM6Q9NQX0 595 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 HEG1Q9ULI3 1381 aa6.82□□□□□ -1.32
COL17A1-206ENST00000483876 BTBD11A6QL63 1104 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 NFKBIEO00221 500 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 PHKG2P15735 406 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 CCT4P50991 539 aaKnown RBP6.81□□□□□ -1.32
COL17A1-206ENST00000483876 NKX1-1Q15270 411 aaPredicted RBP6.81□□□□□ -1.32
COL17A1-206ENST00000483876 MPRIPQ6WCQ1 1025 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 CTU1Q7Z7A3 348 aaKnown RBP6.81□□□□□ -1.32
COL17A1-206ENST00000483876 RPAP2Q8IXW5 612 aaPredicted RBP6.81□□□□□ -1.32
COL17A1-206ENST00000483876 SMC5Q8IY18 1101 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 TNNQ9UQP3 1299 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 DOT1LQ8TEK3 1739 aa6.81□□□□□ -1.32
COL17A1-206ENST00000483876 FAM208AQ9UK61 1670 aaKnown RBP6.81□□□□□ -1.32
COL17A1-206ENST00000483876 COL9A1P20849 921 aa6.8□□□□□ -1.32
COL17A1-206ENST00000483876 KRT24Q2M2I5 525 aa6.8□□□□□ -1.32
COL17A1-206ENST00000483876 BACH2Q9BYV9 841 aa6.8□□□□□ -1.32
COL17A1-206ENST00000483876 SLC52A2Q9HAB3 445 aa6.8□□□□□ -1.32
COL17A1-206ENST00000483876 TLL2Q9Y6L7 1015 aa6.8□□□□□ -1.32
COL17A1-206ENST00000483876 C4AP0C0L4 1744 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 CACNA1FO60840 1977 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 ERVV-2B6SEH9 535 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 PDE4AP27815 886 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 EPHX2P34913 555 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 TRAPPC3LQ5T215 181 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 PNMA8AQ86V59 439 aaPredicted RBP6.79□□□□□ -1.32
COL17A1-206ENST00000483876 LINC00116Q8NCU8 138 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 ZCRB1Q8TBF4 217 aaKnown RBP6.79□□□□□ -1.32
COL17A1-206ENST00000483876 L3MBTL3Q96JM7 780 aaPredicted RBP6.79□□□□□ -1.32
COL17A1-206ENST00000483876 DBF4Q9UBU7 674 aaPredicted RBP6.79□□□□□ -1.32
COL17A1-206ENST00000483876 RGPD5Q99666 1765 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 IBTKQ9P2D0 1353 aaPredicted RBP6.79□□□□□ -1.32
COL17A1-206ENST00000483876 UBR3Q6ZT12 1888 aa6.79□□□□□ -1.32
COL17A1-206ENST00000483876 RGPD2P0DJD1 1756 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 CYP27B1O15528 508 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 GNAI3P08754 354 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 GYS1P13807 737 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 PLA2G5P39877 138 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 FMR1Q06787 632 aaKnown RBP eCLIP6.78□□□□□ -1.32
COL17A1-206ENST00000483876 FLIIQ13045 1269 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 PKN2Q16513 984 aaKnown RBP6.78□□□□□ -1.32
COL17A1-206ENST00000483876 HDGFL1Q5TGJ6 251 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 ZNF790Q6PG37 636 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 SMARCC1Q92922 1105 aaPredicted RBP6.78□□□□□ -1.32
COL17A1-206ENST00000483876 HYPKQ9NX55 129 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 HACL1Q9UJ83 578 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 HDAC5Q9UQL6 1122 aa6.78□□□□□ -1.32
COL17A1-206ENST00000483876 PCDH11XQ9BZA7 1347 aa6.77□□□□□ -1.32
COL17A1-206ENST00000483876 PCDH11YQ9BZA8 1340 aa6.77□□□□□ -1.32
COL17A1-206ENST00000483876 NUCB1Q02818 461 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 CST9Q5W186 159 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 G2E3Q7L622 706 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 TTLL6Q8N841 843 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 NFATC2IPQ8NCF5 419 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 FAM122AQ96E09 287 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 DCTPP1Q9H773 170 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 SAGE1Q9NXZ1 904 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 PDZRN3Q9UPQ7 1066 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 RTCBQ9Y3I0 505 aaKnown RBP6.77□□□□□ -1.33
COL17A1-206ENST00000483876 TAF1LQ8IZX4 1826 aa6.77□□□□□ -1.33
COL17A1-206ENST00000483876 KCNQ3O43525 872 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 HMMRO75330 724 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 SNRPA1P09661 255 aaKnown RBP6.76□□□□□ -1.33
COL17A1-206ENST00000483876 CABP4P57796 275 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 FKBP5Q13451 457 aaPredicted RBP6.76□□□□□ -1.33
COL17A1-206ENST00000483876 SAPCD2Q86UD0 394 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 SIRT2Q8IXJ6 389 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 ANKRD44Q8N8A2 993 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 ARHGEF1Q92888 912 aaKnown RBP6.76□□□□□ -1.33
COL17A1-206ENST00000483876 OTUD5Q96G74 571 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 ERBB4Q15303 1308 aa6.76□□□□□ -1.33
COL17A1-206ENST00000483876 COL6A3P12111 3177 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 KDM3BQ7LBC6 1761 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 MRC1P22897 1456 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 LOC102724428A0A0B4J2F2 783 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 ALDH1L1O75891 902 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 DDX58O95786 925 aaKnown RBP6.75□□□□□ -1.33
COL17A1-206ENST00000483876 GNAI2P04899 355 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 HOXD11P31277 338 aaPredicted RBP6.75□□□□□ -1.33
COL17A1-206ENST00000483876 RFC4P35249 363 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 SIK1P57059 783 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 NOGQ13253 232 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 KSR2Q6VAB6 950 aa6.75□□□□□ -1.33
COL17A1-206ENST00000483876 CHRDL2Q6WN34 429 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms