RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 MROH2AA6NES4 1674 aa9.67□□□□□ -0.86
VPS50-215ENST00000480943 CLTCQ00610 1675 aaKnown RBP9.67□□□□□ -0.86
VPS50-215ENST00000480943 CAMSAP2Q08AD1 1489 aa9.66□□□□□ -0.86
VPS50-215ENST00000480943 LRRC9Q6ZRR7 1453 aa9.66□□□□□ -0.86
VPS50-215ENST00000480943 LMTK3Q96Q04 1460 aa9.66□□□□□ -0.86
VPS50-215ENST00000480943 KIAA1107Q9UPP5 1409 aa9.66□□□□□ -0.86
VPS50-215ENST00000480943 FGFR3P22607 806 aa9.66□□□□□ -0.86
VPS50-215ENST00000480943 HNRNPMP52272 730 aaKnown RBP eCLIP9.66□□□□□ -0.86
VPS50-215ENST00000480943 PLXNC1O60486 1568 aa9.66□□□□□ -0.86
VPS50-215ENST00000480943 ESPNB1AK53 854 aa9.65□□□□□ -0.86
VPS50-215ENST00000480943 NACC1Q96RE7 527 aa9.65□□□□□ -0.86
VPS50-215ENST00000480943 PCDHB9Q9Y5E1 797 aa9.65□□□□□ -0.86
VPS50-215ENST00000480943 MAP3K1Q13233 1512 aa9.65□□□□□ -0.86
VPS50-215ENST00000480943 SETD1BQ9UPS6 1966 aaKnown RBP9.64□□□□□ -0.87
VPS50-215ENST00000480943 ARID1BQ8NFD5 2236 aaPredicted RBP9.64□□□□□ -0.87
VPS50-215ENST00000480943 SPAG9O60271 1321 aaKnown RBP9.64□□□□□ -0.87
VPS50-215ENST00000480943 A0A1B0GTH6 734 aa9.64□□□□□ -0.87
VPS50-215ENST00000480943 GPR37L1O60883 481 aa9.64□□□□□ -0.87
VPS50-215ENST00000480943 NR1H3Q13133 447 aa9.64□□□□□ -0.87
VPS50-215ENST00000480943 EFHC2Q5JST6 749 aa9.64□□□□□ -0.87
VPS50-215ENST00000480943 GPAMQ9HCL2 828 aa9.64□□□□□ -0.87
VPS50-215ENST00000480943 ZNF644Q9H582 1327 aaPredicted RBP9.63□□□□□ -0.87
VPS50-215ENST00000480943 NEURL1BA8MQ27 555 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 C2CD2LO14523 706 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 THBS1P07996 1170 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 H2AFB1P0C5Y9 115 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 H2AFB2P0C5Z0 115 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 CCDC141Q6ZP82 1450 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 MBD5Q9P267 1494 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 CROCC2H7BZ55 1655 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 ARHGEF5Q12774 1597 aa9.63□□□□□ -0.87
VPS50-215ENST00000480943 A2MP01023 1474 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 CLN3Q13286 438 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 CCDC125Q86Z20 511 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 TRIM11Q96F44 468 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 FMNL2Q96PY5 1086 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 KRTAP4-9Q9BYQ8 210 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 PRM3Q9NNZ6 103 aa9.62□□□□□ -0.87
VPS50-215ENST00000480943 ZNF330Q9Y3S2 320 aaPredicted RBP9.62□□□□□ -0.87
VPS50-215ENST00000480943 FZD5Q13467 585 aa9.61□□□□□ -0.87
VPS50-215ENST00000480943 TBC1D2BQ9UPU7 963 aa9.61□□□□□ -0.87
VPS50-215ENST00000480943 ADH6P28332 368 aa9.6□□□□□ -0.87
VPS50-215ENST00000480943 CEBPAP49715 358 aaPredicted RBP9.6□□□□□ -0.87
VPS50-215ENST00000480943 ZNF592Q92610 1267 aa9.6□□□□□ -0.87
VPS50-215ENST00000480943 ABHD17AQ96GS6 310 aa9.6□□□□□ -0.87
VPS50-215ENST00000480943 STRCQ7RTU9 1775 aa9.6□□□□□ -0.87
VPS50-215ENST00000480943 MAST1Q9Y2H9 1570 aa9.59□□□□□ -0.87
VPS50-215ENST00000480943 CTBSQ01459 385 aa9.59□□□□□ -0.87
VPS50-215ENST00000480943 UBAP2LQ14157 1087 aaKnown RBP9.59□□□□□ -0.87
VPS50-215ENST00000480943 KANK4Q5T7N3 995 aaPredicted RBP9.59□□□□□ -0.87
VPS50-215ENST00000480943 ESF1Q9H501 851 aaKnown RBP9.59□□□□□ -0.87
VPS50-215ENST00000480943 MYO3AQ8NEV4 1616 aa9.59□□□□□ -0.87
VPS50-215ENST00000480943 PTPN23Q9H3S7 1636 aa9.59□□□□□ -0.87
VPS50-215ENST00000480943 ZNF142P52746 1687 aaPredicted RBP9.58□□□□□ -0.88
VPS50-215ENST00000480943 RTEL1-TNFRSF6BF6WH68 1400 aa9.58□□□□□ -0.88
VPS50-215ENST00000480943 CNTLNQ9NXG0 1405 aa9.58□□□□□ -0.88
VPS50-215ENST00000480943 GIGYF1O75420 1035 aaPredicted RBP9.58□□□□□ -0.88
VPS50-215ENST00000480943 ELNP15502 786 aa9.58□□□□□ -0.88
VPS50-215ENST00000480943 HSPA2P54652 639 aa9.58□□□□□ -0.88
VPS50-215ENST00000480943 MCCD1P59942 119 aaPredicted RBP9.58□□□□□ -0.88
VPS50-215ENST00000480943 CYP2U1Q7Z449 544 aa9.58□□□□□ -0.88
VPS50-215ENST00000480943 AVENQ9NQS1 362 aaPredicted RBP9.58□□□□□ -0.88
VPS50-215ENST00000480943 MYOM3Q5VTT5 1437 aa9.57□□□□□ -0.88
VPS50-215ENST00000480943 UHRF1BP1Q6BDS2 1440 aa9.57□□□□□ -0.88
VPS50-215ENST00000480943 MCM6Q14566 821 aa9.57□□□□□ -0.88
VPS50-215ENST00000480943 EIF2AK4Q9P2K8 1649 aaKnown RBP9.56□□□□□ -0.88
VPS50-215ENST00000480943 CEP152O94986 1710 aa9.56□□□□□ -0.88
VPS50-215ENST00000480943 GTF2E1P29083 439 aaPredicted RBP9.56□□□□□ -0.88
VPS50-215ENST00000480943 CFAP65Q6ZU64 1925 aaKnown RBP9.56□□□□□ -0.88
VPS50-215ENST00000480943 DNMT1P26358 1616 aaKnown RBP9.56□□□□□ -0.88
VPS50-215ENST00000480943 MIA2Q96PC5 1412 aa9.56□□□□□ -0.88
VPS50-215ENST00000480943 RNF20Q5VTR2 975 aa9.55□□□□□ -0.88
VPS50-215ENST00000480943 CC2D2BQ6DHV5 1058 aa9.55□□□□□ -0.88
VPS50-215ENST00000480943 FIGNL1Q6PIW4 674 aa9.55□□□□□ -0.88
VPS50-215ENST00000480943 NDFIP2Q9NV92 336 aa9.55□□□□□ -0.88
VPS50-215ENST00000480943 RNF17Q9BXT8 1623 aaKnown RBP9.55□□□□□ -0.88
VPS50-215ENST00000480943 ZC3H13Q5T200 1668 aaKnown RBP9.55□□□□□ -0.88
VPS50-215ENST00000480943 BNIP3LO60238 219 aa9.54□□□□□ -0.88
VPS50-215ENST00000480943 GGT6Q6P531 493 aa9.54□□□□□ -0.88
VPS50-215ENST00000480943 GDPD2Q9HCC8 539 aa9.54□□□□□ -0.88
VPS50-215ENST00000480943 KDM5DQ9BY66 1539 aa9.54□□□□□ -0.88
VPS50-215ENST00000480943 DHX29Q7Z478 1369 aaKnown RBP9.53□□□□□ -0.88
VPS50-215ENST00000480943 FAM135AQ9P2D6 1515 aa9.52□□□□□ -0.88
VPS50-215ENST00000480943 POLR1AO95602 1720 aaPredicted RBP9.52□□□□□ -0.89
VPS50-215ENST00000480943 TSPY4P0CV99 314 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 TSPY10P0CW01 314 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 ABL2P42684 1182 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 IRF5Q13568 498 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 NPATQ14207 1427 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 RUBCNLQ9H714 662 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 CEP170BQ9Y4F5 1589 aaPredicted RBP9.52□□□□□ -0.89
VPS50-215ENST00000480943 CAMSAP1Q5T5Y3 1602 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 MROH1Q8NDA8 1641 aa9.52□□□□□ -0.89
VPS50-215ENST00000480943 ZMYM3Q14202 1370 aa9.51□□□□□ -0.89
VPS50-215ENST00000480943 FGD6Q6ZV73 1430 aa9.51□□□□□ -0.89
VPS50-215ENST00000480943 ERVK-9P63128 1117 aa9.51□□□□□ -0.89
VPS50-215ENST00000480943 GNASQ5JWF2 1037 aa9.51□□□□□ -0.89
VPS50-215ENST00000480943 KIF3BO15066 747 aa9.5□□□□□ -0.89
VPS50-215ENST00000480943 EIF4G2P78344 907 aaKnown RBP eCLIP9.5□□□□□ -0.89
VPS50-215ENST00000480943 KRTAP4-2Q9BYR5 136 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms