RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 TSNARE1Q96NA8 513 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 LIMCH1Q9UPQ0 1083 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 TIAM1Q13009 1591 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 ZNF804AQ7Z570 1209 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 METAP2P50579 478 aaKnown RBP eCLIP14.31□□□□□ -0.12
PTPRE-208ENST00000479896 FBXO31Q5XUX0 539 aaPredicted RBP14.31□□□□□ -0.12
PTPRE-208ENST00000479896 BACH2Q9BYV9 841 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 ATP5J2-PTCD1G3V325 749 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 MAP3K9P80192 1104 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 SSH1Q8WYL5 1049 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 USP16Q9Y5T5 823 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 CCDC172P0C7W6 258 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 CCT2P78371 535 aaKnown RBP14.3□□□□□ -0.12
PTPRE-208ENST00000479896 KANK3Q6NY19 840 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 NYXQ9GZU5 481 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 ZCRB1Q8TBF4 217 aaKnown RBP14.3□□□□□ -0.12
PTPRE-208ENST00000479896 KRT23Q9C075 422 aa14.3□□□□□ -0.12
PTPRE-208ENST00000479896 STX6O43752 255 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 UBA7P41226 1012 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 SMC1AQ14683 1233 aaKnown RBP14.29□□□□□ -0.12
PTPRE-208ENST00000479896 NCOA1Q15788 1441 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 IQGAP2Q13576 1575 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 TNNT1P13805 278 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 KIF4BQ2VIQ3 1234 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 SLC4A8Q2Y0W8 1093 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 UBE3BQ7Z3V4 1068 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 CHRNA2Q15822 529 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 NLRP3Q96P20 1036 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 NAA15Q9BXJ9 866 aaKnown RBP14.29□□□□□ -0.12
PTPRE-208ENST00000479896 HMG20BQ9P0W2 317 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 PARP3Q9Y6F1 533 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 SYNJ1O43426 1573 aa14.29□□□□□ -0.12
PTPRE-208ENST00000479896 SYCE3A1L190 88 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 ACTN2P35609 894 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 CCDC144CPQ8IYA2 1237 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 LMAN1P49257 510 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 FSIP1Q8NA03 581 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 SNRKQ9NRH2 765 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 TNRQ92752 1358 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 RARSP54136 660 aaKnown RBP14.28□□□□□ -0.12
PTPRE-208ENST00000479896 SLC26A6Q9BXS9 759 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 SYNCQ9H7C4 482 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 NKTRP30414 1462 aaKnown RBP14.28□□□□□ -0.12
PTPRE-208ENST00000479896 SHTN1A0MZ66 631 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 EXOC1Q9NV70 894 aa14.28□□□□□ -0.12
PTPRE-208ENST00000479896 TMCO5BA8MYB1 307 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 NBPF7P0C2Y1 421 aaPredicted RBP14.27□□□□□ -0.12
PTPRE-208ENST00000479896 DNA2P51530 1060 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 NCBP1Q09161 790 aaKnown RBP14.27□□□□□ -0.12
PTPRE-208ENST00000479896 PTPN14Q15678 1187 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 ACSBG1Q96GR2 724 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 C8orf37Q96NL8 207 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 NPHP3Q7Z494 1330 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 FERP16591 822 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 TBC1D5Q92609 795 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 RMND1Q9NWS8 449 aa14.27□□□□□ -0.12
PTPRE-208ENST00000479896 TMCO3Q6UWJ1 677 aa14.27□□□□□ -0.13
PTPRE-208ENST00000479896 CYP7A1P22680 504 aa14.27□□□□□ -0.13
PTPRE-208ENST00000479896 WTAPQ15007 396 aa14.27□□□□□ -0.13
PTPRE-208ENST00000479896 MICU3Q86XE3 530 aa14.27□□□□□ -0.13
PTPRE-208ENST00000479896 HMGXB3Q12766 1538 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 MCM4P33991 863 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 ANKRD13DQ6ZTN6 518 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 PSMD1Q99460 953 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 TOP2BQ02880 1626 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 ZFYP08048 801 aaPredicted RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 PPM1EQ8WY54 764 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 JDP2Q8WYK2 163 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 DDX19AQ9NUU7 478 aaKnown RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 STX8Q9UNK0 236 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 CNNM2Q9H8M5 875 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 ACEP12821 1306 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 F8W031 263 aaPredicted RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 LMOD1P29536 600 aaPredicted RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 GNAQP50148 359 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 MRPS9P82933 396 aaKnown RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 IFI16Q16666 785 aaKnown RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 ZNF354CQ86Y25 554 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 NEK1Q96PY6 1258 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 PHACTR2O75167 634 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 IDI1Q13907 227 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 DDB1Q16531 1140 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 TMTC2Q8N394 836 aa14.26□□□□□ -0.13
PTPRE-208ENST00000479896 ORC3Q9UBD5 711 aaPredicted RBP14.26□□□□□ -0.13
PTPRE-208ENST00000479896 PICALMQ13492 652 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 SMARCC2Q8TAQ2 1214 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 CPLX3Q8WVH0 158 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 DDX12PQ92771 950 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 CLIP2Q9UDT6 1046 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 BMP15O95972 392 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 KRT13P13646 458 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 MCM5P33992 734 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 HAND2P61296 217 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 RBM10P98175 930 aaKnown RBP14.25□□□□□ -0.13
PTPRE-208ENST00000479896 UBE4AQ14139 1066 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 IFIT1BQ5T764 474 aaKnown RBP14.25□□□□□ -0.13
PTPRE-208ENST00000479896 ESR2Q92731 530 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 UQCRHLA0A096LP55 91 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 UQCRHP07919 91 aa14.25□□□□□ -0.13
PTPRE-208ENST00000479896 SLC4A4Q9Y6R1 1079 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms